| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2682 |
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| Symbol | pilT |
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| ID | 1221529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2890908 |
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| End bp | 2891951 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637239083 |
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| Product | twitching motility protein |
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| Protein accession | NP_520803 |
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| Protein GI | 17547401 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.310327 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACATCG CGCAGCTTCT GGCCTTCGCT GCCAAGAACA AAGCGTCTGA TCTGCACTTG
TCGGCGGGCT TGCCTCCGAT GATCCGGATC CATGGCGACA TGCGCCGTAT CAACGTGCCG
CCGCTCACGC ACCAGGATGT CCACGCCATG GTGTACGACA TCATGAGCGA CGTGCAGCGC
AAGCATTACG AAGAAAACCT GGAAGCCGAC TTCTCGTTCG AGATTCCCGG GCTGTCGCGT
TTCCGGGTCA ACGCCTTCAA CCAGAACCGC GGTGCCGCCG CCGTGTTCCG GACGATTCCG
TCCAAGGTCC TGACGCTGGA AGACCTGAAG GCGCCGGCCG TCTTCGCCGA CCTCGCCATG
AAGCCGCGCG GCCTGGTGCT GGTGACGGGG CCGACCGGCT CGGGCAAGTC GACCACGCTG
GCGGCGATGG TCAATCACCG CAATGAAAGC GACCTGGGCC ACATCCTCAC GGTGGAGGAC
CCGATCGAAT TCGTGCACGA ATCCAAGAAG AGCCTGATCA ACCAGCGCGA ACTGGGGCCG
CATACCCATT CGTTTGCCAA CGCGCTGAAA TCGGCGCTGC GGGAAGACCC GGACGTGGTC
TTGGTCGGCG AATTGCGTGA CCTGGAAACC ATCCGCCTGG CGCTGACCGC GGCCGAAACC
GGCCACTTGG TGTTTGGCAC GCTGCACACG AGTTCCGCGG CCAAGACCAT CGACCGGGTG
GTCGACGTGT TCCCCTCGGA TGAGAAGGAC ATGGTCCGCA CCATGTTGTC CGAATCGCTG
GAAGCGGTGA TCTCGCAGAC GCTGCTCAAG ACGCGCGACG GCTCCGGCCG GGTCGCGGCG
CACGAGATCA TGATCTGCAC GCCGGCCATC CGACACCTGA TCCGCGAGAA CAAGATCTCG
CAGATGTACT CGATGATGCA GACCAGCAGC GGGCTGGGCA TGCAGACGCT GGACCAGTGC
CTGGCGGAGC TCATCAAGCG CTCGGCGATC AACTACGCCG ACGCGCGTGC CATCGCCAAG
AACCCGGACG CGTTCGCGAA CTGA
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| Protein sequence | MDIAQLLAFA AKNKASDLHL SAGLPPMIRI HGDMRRINVP PLTHQDVHAM VYDIMSDVQR
KHYEENLEAD FSFEIPGLSR FRVNAFNQNR GAAAVFRTIP SKVLTLEDLK APAVFADLAM
KPRGLVLVTG PTGSGKSTTL AAMVNHRNES DLGHILTVED PIEFVHESKK SLINQRELGP
HTHSFANALK SALREDPDVV LVGELRDLET IRLALTAAET GHLVFGTLHT SSAAKTIDRV
VDVFPSDEKD MVRTMLSESL EAVISQTLLK TRDGSGRVAA HEIMICTPAI RHLIRENKIS
QMYSMMQTSS GLGMQTLDQC LAELIKRSAI NYADARAIAK NPDAFAN
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