Gene RSc2680 details

Gene Information

• Locus tag: RSc2680
• Symbol: pilE2
• ID: 1221527
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: -
• Start bp: 2889081
• End bp: 2889521
• Gene Length: 441 bp
• Protein Length: 146 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637239081
• Product: type 4 fimbrial biogenesis transmembrane protein
• Protein accession: NP_520801
• Protein GI: 17547399
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4968] Tfp pilus assembly protein PilE
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.0580057
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGGCAAGCA AGCTTGCATG CCAGCGCGCG CGGTCAGCGC GGGGCTTCAC GCTGATCGAG 
CTCATGATCG TGGCGGCGAT TGTCGCCATT CTCGCGGTTC TGGCGTATCC CTCTTACGTT 
CAGTACGTCG TCCGCTCCAA CCGGGCGGCG GCGGAATCGT TCATGCAGGA AGTGGCCGCG 
GCCCAAGAGC GCTTTCTGCT CGATAACCGG GCCTATGCCT CGGACCTCAC GACGCTGCAA 
TATGCCAGCA GTGTTCCGGC CAGCGTCGCC TCCAAGTACC AGTTCAGCTT CACTGCCGTC 
ACGACGGCTC CGCCGGCGTA TACGCTGAAT GCAACGCCGA CGGGCAGCCA GGCCTCCAGC 
GACGCCGCGT GCGGCACGCT CGGCCTGTCG AACACCGGCA GCAAGACGGC CTCCGGCGGT 
GCCTCCAACT GCTGGAAATA G 

 

Protein sequence

MASKLACQRA RSARGFTLIE LMIVAAIVAI LAVLAYPSYV QYVVRSNRAA AESFMQEVAA 
AQERFLLDNR AYASDLTTLQ YASSVPASVA SKYQFSFTAV TTAPPAYTLN ATPTGSQASS 
DAACGTLGLS NTGSKTASGG ASNCWK