Gene RSc2539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc2539 
SymbolamiC 
ID1221386 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp2747322 
End bp2748845 
Gene Length1524 bp 
Protein Length507 aa 
Translation table11 
GC content71% 
IMG OID637238940 
ProductN-acetylmuramoyl-L-alanine amidase AMIC precursor protein 
Protein accessionNP_520660 
Protein GI17547258 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.687203 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGATCA AGCATCTGCC GACCGACCAA CCGGACGATT CCCACCTGCC CAGCCAGGCG 
CGCAGGCAAT GGCTGTCGCG CATGGCCCGG GCGGGCGCCG GGACGGTCGT CCTCAGCCTG
GCCGGTCCGC AGATCGCCTT CGGCGCCAAC ATCGTGGCGG TGCGCGTGTG GCCGGCGCAG
GATTACACGC GCGTGACCAT CGAGTCGGAC ATGGCGCTGT CGGCCACGCA CCAGCTGGTG
GCGGACCCGG ACCGCCTGGT TGTCGACATC GACGGCCTTG ACCTGAACCC GACGCTGCGC
GAGCTGGTGG CCAAGATCAC GCCGAACGAT CCGTACATCC GCCAGGTGCG CGTGGGCCAG
AACCGGCCGC GCGTGGTGCG CCTGGTGTTC GACCTGAAGG AGAGCGTCAA TCCGCAGGTG
TTCACGCTGC TGCCGATCGC CGGCTATCGC AACCGGCTGG TGTTCGACCT GTATCCGGCC
AATCCGCTTG ACCCGTTGAT GCAGCTGGTG CGCGCGACCG AAGACAAGCA GCAGCGCTTC
ATCGCCTCGG GCGGCGCGCC GATGCCGGCA CCGGCCGAGG ACGACGATCC CATCGCCGCG
CTGGCGCGCC GCAGCGCCGG CAGCCCGGCG TCCGCGGCCA CGCGGCCGGC CGCGGATGGG
CGTCCGGCGT TGGCCAATCG CGCGCCGTCG CGCAAGCCCG CGTCGCCCGC CGCCGACAAT
CCGCCGGCGC TGGCCAACGC GCCGATGTCG CCGCCGCTGG CGATCGAACC CGAGCCGCCG
GTGCCGCGCG GCGCGGCTGC CGGTCCGCGC ATGCGCCGGC TGCTGACGGT GGCGATCGAT
CCCGGCCACG GCGGCGAAGA CCCGGGCGCC ACCGGCAGCG CCGGCACGCA CGAGAAGGAC
GTGGTGCTGT CGGTCGCCCG CCTGCTGCGC GCCAAGATCG ACGCCCAGCC CAACATGCGC
GCCATGATGA CGCGCGACGC CGACTACTTC GTGCCGCTCA ACGTGCGCGT GCAGAAGGCG
CGCCGCGTGC AGGCCGACCT GTTCGTCTCC ATCCACGCCG ATGCCTTCCT GTCGCCGGAG
GCGAAGGGGG CATCGGTGTT TGCGCTGTCC GAGCGCGGCG CCTCCAGCGC CCAGGCCAAG
TGGCTCGCCA ACAAGGAGAA CGCGGCGGAC ATGATCGGCG GGGCCAACCT GGGCTCCAAG
GATGCGCAGG TCACGCGCGT GCTGCTGGAC CTGTCGACCA CCGCGCAGAT CAGCGATAGC
ATGAAGGTCG GCCGGTCGGT GCTGGAGCAG ATCGGCGGCA TCAACCGCCT GCACAAGGGA
CAGGTCGAGC AGGCCGGGTT TGCGGTGCTG AAGGCGCCGG ACATTCCGTC GATCCTGATC
GAGACGGCGT TCATCAGCAA CCCGGAAGAA GAGTCCAAGC TCACCGACAG CGCCTACCAG
AATCAGCTGG CCGAGGCGAT CCTGCGCGGC ATCCGCGCCT ACTTCGCCAA GAACCCGCCG
CTGTCGCGCA ATCCGGGCGT GTGA
 
Protein sequence
MLIKHLPTDQ PDDSHLPSQA RRQWLSRMAR AGAGTVVLSL AGPQIAFGAN IVAVRVWPAQ 
DYTRVTIESD MALSATHQLV ADPDRLVVDI DGLDLNPTLR ELVAKITPND PYIRQVRVGQ
NRPRVVRLVF DLKESVNPQV FTLLPIAGYR NRLVFDLYPA NPLDPLMQLV RATEDKQQRF
IASGGAPMPA PAEDDDPIAA LARRSAGSPA SAATRPAADG RPALANRAPS RKPASPAADN
PPALANAPMS PPLAIEPEPP VPRGAAAGPR MRRLLTVAID PGHGGEDPGA TGSAGTHEKD
VVLSVARLLR AKIDAQPNMR AMMTRDADYF VPLNVRVQKA RRVQADLFVS IHADAFLSPE
AKGASVFALS ERGASSAQAK WLANKENAAD MIGGANLGSK DAQVTRVLLD LSTTAQISDS
MKVGRSVLEQ IGGINRLHKG QVEQAGFAVL KAPDIPSILI ETAFISNPEE ESKLTDSAYQ
NQLAEAILRG IRAYFAKNPP LSRNPGV