| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2334 |
|---|
| Symbol | tISRso6b |
|---|
| ID | 1221179 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 2532717 |
|---|
| End bp | 2533562 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637238733 |
|---|
| Product | transposase/IS protein |
|---|
| Protein accession | NP_520455 |
|---|
| Protein GI | 17547053 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1484] DNA replication protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0665572 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCTC AGCTCGAACG GCTCACCGTC CTGTGCCAGC AGCTCAACCT GCAGCACCTT
CCCACACAGC TCGCCCACCT GGGCCAGATG GCGGCCAAGC GGGAGCTCGG CTACCTGGAC
TTCCTTGAGC ACGCCTTGAA GGACGAAGCC ATGGCGCGGG CCGAGCGCAT GCGACGAACG
CTGACACGAT TGGCCGGCTT CCCGGCGATC AAGACCTTGG ACGAGTTCGA CTTCGAGTTC
GCAACCGGCG TGCCGAAGGC GATGGTCCTG GAGTTGGGCA GCCTTGCATT CGTTGAGCGA
GCCGAGAACG TGGTGCTGCT CGGACCTTCC GGCGTGGGGA AGACCCACCT GGCGATCGCC
CTGGGCTATC GCGCCACGCA GGCCGGCATG CGGACGCGGT TCATCACGGC GGCCGATCTG
CTGATGCAAC TTGCAGCCGC CCTGCAGCGG AACCAGCTCG ATGTCGCCAT CAAGCGCATT
GTGAATCCCT ACAAGCTCTT GATCGTTGAC GAGATGGGCT ACCTGCCGAT GGACCGAGAA
CAAGCCAATC TACTGTTCCA GGTCATTGCT AAGCGGTATG AAACCGGAAG CTTGGTGCTG
ACGAGCAATC TGCCCTTCGG TCAATGGGAT CAGACCTTTG CTGGCGACGC CACGCTCACT
GCCGCTCTGC TAGATCGCCT GCTGCATCAC GCGCACGTTG TGCCGATCTC CGGCGACTCG
TACCGACTGA AGGAGAAGCG CCAGGCGGGC ATGATCCATC GAATGTCGCT GTCGAATCCT
GTGCCCGACG ACCTCAAACG CAAACGCATT CCAAAGGAGC CACCGCCCAG CCACCCGATG
CAATAA
|
|---|
| Protein sequence | MTPQLERLTV LCQQLNLQHL PTQLAHLGQM AAKRELGYLD FLEHALKDEA MARAERMRRT
LTRLAGFPAI KTLDEFDFEF ATGVPKAMVL ELGSLAFVER AENVVLLGPS GVGKTHLAIA
LGYRATQAGM RTRFITAADL LMQLAAALQR NQLDVAIKRI VNPYKLLIVD EMGYLPMDRE
QANLLFQVIA KRYETGSLVL TSNLPFGQWD QTFAGDATLT AALLDRLLHH AHVVPISGDS
YRLKEKRQAG MIHRMSLSNP VPDDLKRKRI PKEPPPSHPM Q
|
|---|
| |