| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2161 |
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| Symbol | |
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| ID | 1221004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 2343596 |
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| End bp | 2344870 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637238558 |
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| Product | coproporphyrinogen III oxidase |
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| Protein accession | NP_520282 |
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| Protein GI | 17546880 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0050137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCCGA TCCACCCCGT GGGCGGGAGC CAGACGCCCG CTTCTTCCAC CGCCGCAGCC
GGGACCGGCG ATGCCGTCAC GTCGGTCTTC CTGCAGCCGG GCAGGATCAG CCTGCCGGCC
TCGCCGCCGC TGTCGCTCTA TGTGCATGTG CCGTGGTGCG TGCGCAAATG CCCCTATTGC
GATTTCAACT CGCATGCGGA GCCGGAGGCG GGCATCCCGG AAGACCGCTT CCTCGCGGCC
ATCCGGCAGG ACCTGGAGGC CGCGCTGCCG ATGGTGTGGG GCCGACGCGT GCATACGATC
TTCATCGGCG GCGGCACGCC GAGCCTGCTG TCGGCGCGGG GGCTGGATAC GCTGCTGTCG
GACATCCGCA TGCTGCTGCC GGTCGATGCG GATGCCGAGA TCACCATGGA GGCCAATCCC
GGCACCTTCG AGGCCGAGCG CTTCCGCAGC TATCGGGCCA GCGGCGTGAA CCGGCTGTCG
ATCGGCATCC AGAGCTTCAA CGACACGCAC CTGCAGGCGC TGGGCCGCAT CCACAGCGCC
GCCGAGGCAC GGGCGGCCAT CGACATCGCC CGCGCGCACT TCGACAACAT CAACCTCGAC
CTGATGTTCG CCCTGCCCGG CCAGACCCTG GCCGAATGCG AGGCCGATGT GGAAGCCGCG
CTGTCGTTCG GCACCAGCCA CGTCTCGCTG TACCACCTGA CGCTGGAGCC CAACACCTAC
TTTGCCAAGC ACCCGCCCGC GCTGCCGGAC GACGACACCG CGTTCGCCAT GCAGGACTGG
ATCCACGCAC GGCTGGCCGC GGCCGGCTAC GAGCACTACG AGGTGTCGGC CTACGCCAGG
CCGGGCAAGC GCTGCAAGCA CAACCTGAAC TACTGGCAGT TCGGCGATTA CCTCGGCATC
GGGCCGGGCG CGCACGGCAA GCTGAGCTTT CCGCACCGGG TGATCCGGGA CATGCGCCAC
AAGCACCCCG AGACCTACCT GCGCCAGGCG GAAACGGCCG GCGGCGCGAC GGTGGTGCAG
GAGCAGCGCG AAGTCGACGC GGCCGACCTG CCGTTCGAGT TCATGCTCAA CGCGCTGCGG
CTGACCGACG GCTTCCCCGT CACGCTGTTC CAGGAGCGCA CCGGCCTGCC GCTGCGCGGC
ATCGAGCGCG AACTCGATGC CGCCGAGCGG CGCGGCCTGC TCGTGCACGA CCACGCAACG
ATCCGGCCGA CCGAACTGGG CCAGCGCTTT CTCAACGATC TGCAGGCGCT GTTCCTCGCC
GACGACGAAA ACTGA
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| Protein sequence | MIPIHPVGGS QTPASSTAAA GTGDAVTSVF LQPGRISLPA SPPLSLYVHV PWCVRKCPYC
DFNSHAEPEA GIPEDRFLAA IRQDLEAALP MVWGRRVHTI FIGGGTPSLL SARGLDTLLS
DIRMLLPVDA DAEITMEANP GTFEAERFRS YRASGVNRLS IGIQSFNDTH LQALGRIHSA
AEARAAIDIA RAHFDNINLD LMFALPGQTL AECEADVEAA LSFGTSHVSL YHLTLEPNTY
FAKHPPALPD DDTAFAMQDW IHARLAAAGY EHYEVSAYAR PGKRCKHNLN YWQFGDYLGI
GPGAHGKLSF PHRVIRDMRH KHPETYLRQA ETAGGATVVQ EQREVDAADL PFEFMLNALR
LTDGFPVTLF QERTGLPLRG IERELDAAER RGLLVHDHAT IRPTELGQRF LNDLQALFLA
DDEN
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