| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2153 |
|---|
| Symbol | spoT |
|---|
| ID | 1220996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2335348 |
|---|
| End bp | 2337555 |
|---|
| Gene Length | 2208 bp |
|---|
| Protein Length | 735 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637238550 |
|---|
| Product | bifunctional (P)ppGpp synthetase II/guanosine-3',5'-bisdiphosphate 3'-pyrophosphohydrolase |
|---|
| Protein accession | NP_520274 |
|---|
| Protein GI | 17546872 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000522394 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTCGGGC CGACCTCGCA GCCGGCCGCG CCGCCGCGCC AGCAGGTGGT CTCCATCGCG
GGGCTGACGG AGAAGCTGTC GTACCTGAAG CCGGCCGACA TCAAGCTGGT GAAGGAAGCC
TTCCACTTCT CCGACGAGGC GCACCTCGGC CAGTACCGCC AGAGCGGCGA GCCGTACATC
ACGCACCCGG TGGCGGTGGC GGAAATCTGC GCGGGCTGGA AGCTGGACGT GCAATCGATC
ATGGCCGCGC TGCTGCACGA CGTGATCGAG GACCAGGGCG TCACCAAGAG CGAACTGGCC
GAGAAGTTCG GCCCCAAGGT CGCGGAGCTG GTCGACGGCC TCACCAAGCT GGACAAGCTC
GAATTCCAGA GCCGCGAGCA GGCGCAGGCG GAGAGCTTCC GCAAGATGCT GCTGGCGATG
GCGCGCGACG TGCGCGTGAT CCTGGTCAAG CTGGCCGACC GCACGCACAA CATGCGCACG
CTCGACCACG TGCCGCCCGA AAAGCGCCGC CGCATCGCCG GCGAGACGAT GGAGATCTAC
GCGCCGATCG CGCACCGGCT CGGGCTCAAT ACCACGTACC GCGAACTGCA GGAGTTGAGC
TTTCGCATCG GCTCGCCGTT CCGCTATGCC ACGCTGGAGA AGGCCGTCAA GGCCGCGCGC
GGCAACCGGC GCGAGGTGGT CAGCCGCATC CTGGAGGCCG CGCAGCGCGC CCTGGGCGAC
GCGGGCGTTT CGGCCGAGCT GACCGGCCGC GAGAAGACGC TCTACAGCAT CTACCGCAAG
ATGCACGACA AGCAGCTGTC GTTCTCGCAG GTGCTGGATG TGTACGGCTT CCGCGTGGTG
GTCGAGACGC AGATGCACTG CTACATGGCG GTGGGCGCGC TGCACGGTCT GTACAAGCCG
ATGCCCGGCA AGTTCAAGGA CTACATCGCC ATCCCCAAGA TCAACGGCTA CCAGTCCGTG
CACACCACGC TGGTGGGGCC GTTCGGCACG CCGGTCGAAT TCCAGATCCG CACGCGCGAG
ATGAACCAGA TCGCCGAGGC TGGAGTGGCG GCGCACTGGA TGTACAAGCA GCACCACGAC
GAGCCGGATC GCGCGCAGCA GCAGGCGCAC CAGTGGCTGC AGTCGCTGCT CGATATCCAG
AGCCAGAGCG GCGATTCGCA GGAGTTCCTG GAGCACGTCA AGATCGACCT GTTCCCGGAT
GCCGTCTACG TGTTCACGCC CAAGGGCGAG ATCCGCGCGC TGCCGCGCGG CGCCACGGCG
TTGGACTTCG CCTATGCCGT GCACAGCGAC CTGGGCAACC AGTGCGTGGC GGTCAAGATC
AACAATGCGC TGCTGCCGCT GCGTACCGAG CTCAAGAACG GCGATATCGT CGAGGTGGTG
ACGGCGCCGT ACTCCAAGCC GAACCCGGCG TGGCTCACGT TCGTGCGTAC CGGCAAGGCG
CGCGCGGCGA TCCGCCATTT CCTGAAGACC GCCAAGCTGG ACGAAGCCAT TCAGCTGGGC
GAGCGGCTGC TGGAGCAGGC GCTGCGCCAG CTGGGCATCG ACATGAAAGC CGTGCCCGCG
CAGGTGTGGG AGCGGATCGT GCAGTGGACC GGCAACAAGG CGCGCGAAGA CATCTTCGCC
GACCTGGCGC TGGGCCGGCG CGTGGCCGCC GTGGTGGCGC GGCGCATCGA GATCGGGTTG
CAGGAGGGCG GGCACGAGGG CGATGAAGCG CTGATCGCCG CCGTCCACGC CTTCGCCGGC
GAAGAGGCGC CCGCCGTGAC GGTCAGCGGC GACGAAGGCA TGGCCATGGT GTTCTCGCCG
TGCTGCCGGC CGATTCCCGG CGACCCGATC GTCGGCTACA TCGGCAAGGG CGAAGGGCTG
CAGATCCACG TGGAAGAATG TCGCGTGGCC AAGCGCCTGC ACGGCAAGGA TCCGGAGCAC
TGGATCGACG TCATGTGGGC GGAGCACACC ACGCGCGCCT TCGATGTGTC GATCAAGGTG
CTGGTGCGCA ATACCAAGGG CATTCTCGCG CGGGTGGCCG CGGACCTGAC CTCGGCCGAT
GCCAACGTCG CGCATGTGTC GATGGAGCAG GAGGGTGGTG GCCAGGAAGC CACGTACATG
ACCTTCCTGA TCCAGGTGCA TGACCGCGTG CACCTGGCCG ACGTGATGCG TGCGCTGCGA
CGCAACCTCG ATGTGATCCG CATCGCGCGG GACCGGGGTG GAGAGTAG
|
|---|
| Protein sequence | MFGPTSQPAA PPRQQVVSIA GLTEKLSYLK PADIKLVKEA FHFSDEAHLG QYRQSGEPYI
THPVAVAEIC AGWKLDVQSI MAALLHDVIE DQGVTKSELA EKFGPKVAEL VDGLTKLDKL
EFQSREQAQA ESFRKMLLAM ARDVRVILVK LADRTHNMRT LDHVPPEKRR RIAGETMEIY
APIAHRLGLN TTYRELQELS FRIGSPFRYA TLEKAVKAAR GNRREVVSRI LEAAQRALGD
AGVSAELTGR EKTLYSIYRK MHDKQLSFSQ VLDVYGFRVV VETQMHCYMA VGALHGLYKP
MPGKFKDYIA IPKINGYQSV HTTLVGPFGT PVEFQIRTRE MNQIAEAGVA AHWMYKQHHD
EPDRAQQQAH QWLQSLLDIQ SQSGDSQEFL EHVKIDLFPD AVYVFTPKGE IRALPRGATA
LDFAYAVHSD LGNQCVAVKI NNALLPLRTE LKNGDIVEVV TAPYSKPNPA WLTFVRTGKA
RAAIRHFLKT AKLDEAIQLG ERLLEQALRQ LGIDMKAVPA QVWERIVQWT GNKAREDIFA
DLALGRRVAA VVARRIEIGL QEGGHEGDEA LIAAVHAFAG EEAPAVTVSG DEGMAMVFSP
CCRPIPGDPI VGYIGKGEGL QIHVEECRVA KRLHGKDPEH WIDVMWAEHT TRAFDVSIKV
LVRNTKGILA RVAADLTSAD ANVAHVSMEQ EGGGQEATYM TFLIQVHDRV HLADVMRALR
RNLDVIRIAR DRGGE
|
|---|
| |