| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2018 |
|---|
| Symbol | |
|---|
| ID | 1220858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2196578 |
|---|
| End bp | 2197543 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637238412 |
|---|
| Product | transcription regulator protein |
|---|
| Protein accession | NP_520139 |
|---|
| Protein GI | 17546737 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.416664 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.213867 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCATCCA TCAATATCGT GCATATTTCG CGGGTCGACC TCAACCTGTT CGTCGTCTTT
GACGCCATCT ACAGCGAAGG CGGCATCACC GCGGCCGCGC GCACGCTCAA CCTGACGCAG
CCGGCCGTCA GCCACGCGCT GGGGCGGCTG CGCGAGCTGT TCGACGATCC GCTGTTCGAG
CGGCGCGGGC AGGGCATGGT GCCGACGCCG CTGGCCCGCA CGCTGGTCGC CGAGGTGCGC
GCCGCGTTGC AGGGCTTCGA GCGCACGCTG CGCGAAGGCA CGCGCTTCGA TCCGGCCGCC
AGCGAGCGCC GCTTCACGCT GTCGATGCGC GATGCGCTGG AAGCGACGCT GCTGCCGCCG
CTGATGGCCG CCATCGCCCG CGAGGCGCCG CGCATCGATG TGACCACCGT GCGCGGCGAC
CGCCGCCAGC TCGAAGCCGA ACTGCTCGCC GGCACCATCG ATGCGGCGGT CGACATCCTG
CTGCCGGTGT CGCCGGCCAT CCGCCACGCG CCCCTGCTGT CGGACCCGAT GGTGGTGCTG
GCGCGGCCTG GCCATCCGGT CACGCAGGGG CCGCTGACAC TGGAGCGCTA CCTGGCCTAC
GAGCACGTGC ACGTGTCATC GCGCCGGCGC GGCGCGGGGC TGGAGGACGT GGAGCTGCGC
CGGCTCGGGC GCGAGCGGCG CGTGCGGCTG CGCTGCCAGC ATTACCCGGC GGCGTGTCGC
GTGGTCAGCT GCACCGACCT GCTGGTGACG CTGCCGGTGC GCTATGCGCG CATCGCCAAC
GCGCCGTACG GCAACGTGAT GCTGCCGCTG CCGTTCAAGG TGCCGCCGCT GGAGCTCTAC
CTGTACTGGC ACGCCAACAG TGACCAGGAT GCCGCCGGCC GCTGGCTGCG CGATCACGTA
CTCGCCGCGA TGGCCGGCGT GGCCGAAGAC GAGGCTGCCG CGGCGCTCGC CGGCAGGAAC
GCATAG
|
|---|
| Protein sequence | MPSINIVHIS RVDLNLFVVF DAIYSEGGIT AAARTLNLTQ PAVSHALGRL RELFDDPLFE
RRGQGMVPTP LARTLVAEVR AALQGFERTL REGTRFDPAA SERRFTLSMR DALEATLLPP
LMAAIAREAP RIDVTTVRGD RRQLEAELLA GTIDAAVDIL LPVSPAIRHA PLLSDPMVVL
ARPGHPVTQG PLTLERYLAY EHVHVSSRRR GAGLEDVELR RLGRERRVRL RCQHYPAACR
VVSCTDLLVT LPVRYARIAN APYGNVMLPL PFKVPPLELY LYWHANSDQD AAGRWLRDHV
LAAMAGVAED EAAAALAGRN A
|
|---|
| |