| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1984 |
|---|
| Symbol | trpF |
|---|
| ID | 1220824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2158622 |
|---|
| End bp | 2159314 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637238378 |
|---|
| Product | N-(5'-phosphoribosyl)anthranilate isomerase |
|---|
| Protein accession | NP_520105 |
|---|
| Protein GI | 17546703 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0135] Phosphoribosylanthranilate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0609145 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTTC ACCGTACCCG TATCAAGCTC TGTGGCCTGA CCCAGCCGGA CGACGTCGAC
CATGCCGTCG CGCTGGGCGC CGATGCCATC GGGCTGGTGT TCTATCCGCC CAGCCCCCGC
TACGTCGCCA CCGGGCGCGC GGCCGAGCTG GCCCGCCGTG CCGGTCCGTT CGTCACCGTG
ACGGGCCTGT TCGTCAATGC CAGCGCCGAC GACGTGGCCC GGGTGCTCGA CCAGGTACCG
CTCACGCTGC TGCAGTTCCA CGGCGACGAG ACGCCCGAGC AGTGCGCGGA GATCGCCGGG
AAGGTGGGGC TGCCCTGGCT GCGCGCCCTG CGTGTTCAGC CGGGAACCGA TTTGGTAGAA
TTCGCCGATC GGTTTGCCGC TGCCCAGGGG TTGCTGCTCG ACGCATTCGT CGAGGGCTAC
GGCGGCGGCG GCCACGTCTT CGACTGGACC CTGATTCCCC CGCAATGGCT CTCGCAATCC
GCACCGCCAA GCGCCGCTCC TCGGCTCGTT TTGAGTGGTG GGTTGAGCGC GCAAAACGTC
GCTGGCGCGA TTGAGCGTGT GCGGCCTTAC GCTGTCGACG TGAGCAGCGG AATCGAGGCC
GCACGGGGCG TGAAAGACCG CGCCCGCATG ACCGCATTCG TGCGTGCGGT CCGCGAGGCC
GATGCCGCCC TGGGCGCGTC GGTGCAAGCC TGA
|
|---|
| Protein sequence | MPLHRTRIKL CGLTQPDDVD HAVALGADAI GLVFYPPSPR YVATGRAAEL ARRAGPFVTV
TGLFVNASAD DVARVLDQVP LTLLQFHGDE TPEQCAEIAG KVGLPWLRAL RVQPGTDLVE
FADRFAAAQG LLLDAFVEGY GGGGHVFDWT LIPPQWLSQS APPSAAPRLV LSGGLSAQNV
AGAIERVRPY AVDVSSGIEA ARGVKDRARM TAFVRAVREA DAALGASVQA
|
|---|
| |