Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1884 |
Symbol | dppD2 |
ID | 1220723 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 2067869 |
End bp | 2068867 |
Gene Length | 999 bp |
Protein Length | 332 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637238277 |
Product | oligopeptide ATP-binding ABC transporter protein |
Protein accession | NP_520005 |
Protein GI | 17546603 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0431032 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.324708 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCCG CCGACCCGAC GCTGCAGGTG CGCAACCTGC GTACCCATTT CTTCACGCGC GACGGCGTGC TGCCGGCGGT GGACGACGTG TCGTTCTCGC TCGGGCGCGG GCGCATCCTG GGGCTGGTGG GCGAATCGGG CTCGGGCAAG TCGGTGACAG GCTTTTCCAT CATGGGGCTG GTCGATCCGC CCGGCCGCGT GGCGGGCGGC GAGATCCTGT TCCAGGGCCG CGACCTGGTC CGGCTGCCGG CGCGCGAGCT GCGCAGGCTC CAGGGCAACC GCATCGCCAT GGTCTTCCAG GACCCGATGA TGACGCTCAA CCCGGTGCTG CGCATCGAGG CCCAGATGGT CGAGGCTGTG CGCGCGCACA GCGGCATGCG CCACGCTCAG GCCCGCGAGC ACGCGCGCGA CACGCTGGGC CTGATGGGCA TTCCGAGTCC GGACGAGCGG CTGCGCGCGT ATCCGCATCA GCTCTCGGGC GGCATGCGCC AGCGCGTGGC GATCGCCATC GCGATGCTGC ATCGCCCCGA CCTGATCATT GCCGACGAGC CGACCACGGC GCTGGACGTG ACCATCCAGG CGCAGATCCT GTCGGAGGTG CAAAAGCTGG CGCGCCAGCA CGGCACCGCG CTGATCTGGA TCACGCACGA CCTGTCCGTC GTCGCCGGCC TCGCCGACGA GGTGGCGGTG ATGTACGCCG GCCGCATCGT CGAGCATGGC CCGGTGGATG CCGTGCTCGA CGCGCCCCTG CATCCGTACA CCCGGGGCCT GATCGACAGC CTGCCCAGCG AGAACCGGCG CGGCCGGCGC CTGCGGCAGA TCCCGGGCAT GACACCCAGC CTGCTGGCGC TGCCGCCCGG CTGTGCCTTC GCGGCGCGCT GCCCGCGCGC CACCGAGGCC TGCGGCGTAC GCCCGGAGAT CACACAGCAC AGCACCGGCC GCCTCGTGCG CTGCGTCCAC CCCGACACGT TGTCTGCCGC CGCGCGGGAG GTCGCATGA
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Protein sequence | MSAADPTLQV RNLRTHFFTR DGVLPAVDDV SFSLGRGRIL GLVGESGSGK SVTGFSIMGL VDPPGRVAGG EILFQGRDLV RLPARELRRL QGNRIAMVFQ DPMMTLNPVL RIEAQMVEAV RAHSGMRHAQ AREHARDTLG LMGIPSPDER LRAYPHQLSG GMRQRVAIAI AMLHRPDLII ADEPTTALDV TIQAQILSEV QKLARQHGTA LIWITHDLSV VAGLADEVAV MYAGRIVEHG PVDAVLDAPL HPYTRGLIDS LPSENRRGRR LRQIPGMTPS LLALPPGCAF AARCPRATEA CGVRPEITQH STGRLVRCVH PDTLSAAARE VA
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