| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1854 |
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| Symbol | |
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| ID | 1220692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2036828 |
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| End bp | 2038255 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637238246 |
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| Product | putative outer membrane multidrug resistance lipoprotein |
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| Protein accession | NP_519975 |
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| Protein GI | 17546573 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.100642 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATTTTG ATTCGTCCTT TCCGGCAGAC ACGCTTCGCT GGCTGCGCGC GGGTGTCGTC
CTGCCGCTGG CCTTGGTGGC AGGCGCCTGC GCTCAGTTCC CCGAGGCCAG CGAGCGGCCC
ACCCCGCAAA CACCGGAAGG GCTGCACAGC GCGTCCAGCC TTGCGGCATC TGCCGTCGCG
TGGCCCGATG ATCATTGGTG GCAAGCCTAT GGCGATGCCC AGCTCAATGC CCTGATTGGA
GAAGCACTGC GCGACTCGCC GGACATGGCC GCTGCCGCCG CCCGCCTGCG CGGGGCCGAA
GCTGCCGGGG CCGTGGCGGG TGCCGCCTTG CTTCCTCAGG TGAGCGCCAA CGCCTCCGCT
GCCCGCCAAC GCCAGAGCGG CTCTAGCGAC TGGAATGAGG TCGGCCGCGC CACCCTCGAT
TTCAGTTGGG AAATCGACTT CTGGGGCCGC AACCGCGCGA GTCTGGCCGC CGCGACCTCC
GACCTGGAAG CCAGCCGCGC CGACGCGGCC CAGGCCCGGC TGACGCTGGC GAGCGCCATC
GCCTCCAGCT ACGCCGACCT GGCCGGATTG TATGCAGTGC GGGACGCCGA TGAAGCGGCG
CTGGCCGTGC GTCGGCACAG CGCGCAACTG TTCACCGAAC GTTTTGCGAG CGGGCTGGAA
ACCCGCAGCG GCGTCAAGCA GGCCGAAGCC CTGTTGGCCA GCGCCGAGGG CGAGTTGCTG
CGCGTGGACG AAAGCATCGG CCTCACGCGC CATGCCCTGG CCGCGCTGGT GGGGGCGGGG
CCGGATCGGG GCCTGACGAT CCGGCGGCCC AGCGTCGCCA TCCGCAGTCC CGAGGGTCTG
CCTGCGGAGC TGGCCGTGAA TCTGCTGGGG CGCCGCCCGG ACGTGGTGGC CGCGCGCCTT
CAAGCAGAGG CGCAGGTGCA TCGCATCGAC AGCAAGCGCG CCGAGTTCTA CCCCAACGTC
AATCTCTCCG CGTTCATCGG CTTCGAGTCC ATCGGGCTGT CCAACCTGTT CAAGTCGGGT
TCACGCATCG GCAGCATCGG GCCGGCGGTG TCGCTGCCCA TCTTCAACGG CGGTCGCCTG
CGCGGGGAGT TGAAGCGCGC GCAGGCGTCC TATGACGAGG CCGTCGCCAA CTACAACCGC
ACGCTGACCC AGGCCCTGCA GGACGTGGCC GATGCCTGGC TGAGCCGCAA GGCATTGGCT
CCCCGGCTGG CGAAGGTGGA AGAAGCCTTC AGGGCCGCCG AGCAAGCCTA CCGCGTCACA
CTCAACCGCT ACGAAGGCGG CCTCGCCAGC TACCTGGAAG TCCTCACCGC GCAGGACACC
CTGCTGACCA ACCAGCGTGC CCTGACCGAT CTGCAATCCC GCGCCTTCAC GCTGGACGTT
GCCATGACCC GCGCCCTGGG CGGCGGCTAC CGCGCGCCCC GCAGCTAA
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| Protein sequence | MYFDSSFPAD TLRWLRAGVV LPLALVAGAC AQFPEASERP TPQTPEGLHS ASSLAASAVA
WPDDHWWQAY GDAQLNALIG EALRDSPDMA AAAARLRGAE AAGAVAGAAL LPQVSANASA
ARQRQSGSSD WNEVGRATLD FSWEIDFWGR NRASLAAATS DLEASRADAA QARLTLASAI
ASSYADLAGL YAVRDADEAA LAVRRHSAQL FTERFASGLE TRSGVKQAEA LLASAEGELL
RVDESIGLTR HALAALVGAG PDRGLTIRRP SVAIRSPEGL PAELAVNLLG RRPDVVAARL
QAEAQVHRID SKRAEFYPNV NLSAFIGFES IGLSNLFKSG SRIGSIGPAV SLPIFNGGRL
RGELKRAQAS YDEAVANYNR TLTQALQDVA DAWLSRKALA PRLAKVEEAF RAAEQAYRVT
LNRYEGGLAS YLEVLTAQDT LLTNQRALTD LQSRAFTLDV AMTRALGGGY RAPRS
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