Gene RSc1807 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1807 
Symbol 
ID1220645 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1958894 
End bp1960969 
Gene Length2076 bp 
Protein Length691 aa 
Translation table11 
GC content70% 
IMG OID637238199 
Productputative siderophore receptor protein 
Protein accessionNP_519928 
Protein GI17546526 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0597664 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGGTGA GTACGTTGAG GGGCCTGCTG CTGGCGGGCA GCACGCTGGG CGCGGTGGGG 
GCGGCCGGCG CGCAGGACAG CGCCACGGCG GCCGAACCGG CGGACGTGGC GCAACTGGCG
CCGGTGGTGG TGACGGGCAC CAAGCTCGAT GCCAGCGGGC AGACCGCCGA CAGCGCCACG
TCGGTGGCCA GCGGTGCGCG CCTGCAGGCG GCCGGGGTGG CGCGCACCGA CGAACTGGGC
AAGCTGTTTC CCGAGCTGAC GGTCACGCCC CGCAGTTCGC GCGCGTACAC GCTGTTCGGC
ATGCGCGGGA CGCCGTCGTC CGACTTCTAC AGCCCGGCGG TGACGGTCTA CGTCGACGGC
GTGCCGCAGG ACATGGCCTA CTTCACGCAG CCGCTGCCGG ACGTCGAGCA GGTCGAGGTC
CTGCGGGGGC CGCAGGGCAC GCTGTATGGC CGCGCCGCGC AGGGCGGCGT GATCAACATC
GTGACGACGA AGCCGAACAA CCGCTTCGGC GCCCAGGCGA GCGTCGACGT CAACAACCTG
ACGCGGCGCA CCGATCTGTC GGTGCGCGGG CCGCTGGTCA AGGACCTCCT GTATGGCGAC
GTGTCCGCCT ATTTCGACGA CCGCCCGGGC ACGCTGAAGA ACCCGGCCAC CGGTGCCGAC
CAGCTCGATT CCGGCCGCGA GGCCCTGGGC CGCGCACGGC TGCGCTGGAC ACCGCGGGAC
ACCGACCTCG ACGCCACGCT GTCGGTGAGC CACGACCGCT ACCGCTCGCA CGAAGAATAC
TTCCAGGCCT ATGACCTGAA AGACCGGCAC GCCATCGCGT CATCGCCGTT CGATCTGACC
GAACCGTCGC TCACGCGCAC TGTCACGCAG GCGGCGCTCA GCGTCGACTA CTACCTGCGG
GGTTGGAAGC TGTCGTCGGT CAGCGCCTAC CAGGACCGCC GGCTCGAGCG CGTGCTGACC
ACTGGCAACG CCGATCCGGA AAACCAGAAG ACCTTCTCGC AGGAACTGCG CGTCGCCACC
TCCGGCGACG TCAAGCGCCC GGTGGATGGC GTGTTCGGCC TCTATTACGA GAAGCAGGCA
TTCGAGCGCG ATCGGGGCAT CGCGGTGCCT GGCGTGTCGG CGTTCCTGTT CCCCGGCCCG
AGCCGCAGCG AGTCGAACCT GCGCTCGATG GCCGCCTTCG GCGAGGGCGT ATGGCACGCC
ACCGAGCGGC TCGACCTGAC GGCCGGGCTG CGCTACGGCA TCGACAGCGC CGACATCCAC
TACAACCGCA CCGGCGCGGC CGCGCTGTCC TTCGCCGGCG ACAAGACGTT CCGCAGCCTG
ACCCCGAAAG TGTCGGTGGG CTACCAGGCA GCGCCCGGGT GGCGCGTGTA CGGCCTGTAC
AGCGAAGGCT ACAAGGCCGG GGGCTTCAAC CGCATCGCCG ACAACAGCGC CGGCAGCATT
CCGTACAGCG CCGAGCGGCT GCGCAACGTC GAGGTCGGCT TCCAGGCCGA TCTGCTCGGC
AAGCGGCTGC GGCTGGACGG CGCGCTGTTC CACAGCCGCA CCAGCAATCT GCAGGCGCAG
GTCGTCTCGG GCCTGTTCCA GATGCTGAGC AACGTGGGCG ATGCCCGCGC CACCGGCGTG
GAGCTGAACG GCACCTGGCT GGCCACGCCG GACCTCACGC TGCGCGCCGG CGGCGCCTGG
ACCACCAGCA AGATCTACAG CTACAGCGCG CCGCAGGGCA ATCTCGACCT GACCGGCAAG
CGCGTGCCCT ACGTGGTGCC GCTGAGCCTG CGCGCCTCGG GCGAATACCG CTTCCGTCCG
CAAGGGATGC GGGGTCGGCT GCGATGGAAT GTCGGCATGA CCTACTCGGG CGACATGTGG
TTCGACGCGG CCAACACCCT GCGCCAGCCG GCCTATGCCC TGCTCGACAC CTCGCTGAGC
TGGGACATCA ACAAGCATCT GACGGTGGTC GGCTATGTCG ACAACCTGAC CGACCGCGCC
GTGCGCACCT ATGCGTTTTC GCTCGGCACG TTCGGCACTT TTGCCCAATA CGGGCAGGGC
CGCACGATCG GGCTGCGCCT TCAGGCCAGG CTGTGA
 
Protein sequence
MGVSTLRGLL LAGSTLGAVG AAGAQDSATA AEPADVAQLA PVVVTGTKLD ASGQTADSAT 
SVASGARLQA AGVARTDELG KLFPELTVTP RSSRAYTLFG MRGTPSSDFY SPAVTVYVDG
VPQDMAYFTQ PLPDVEQVEV LRGPQGTLYG RAAQGGVINI VTTKPNNRFG AQASVDVNNL
TRRTDLSVRG PLVKDLLYGD VSAYFDDRPG TLKNPATGAD QLDSGREALG RARLRWTPRD
TDLDATLSVS HDRYRSHEEY FQAYDLKDRH AIASSPFDLT EPSLTRTVTQ AALSVDYYLR
GWKLSSVSAY QDRRLERVLT TGNADPENQK TFSQELRVAT SGDVKRPVDG VFGLYYEKQA
FERDRGIAVP GVSAFLFPGP SRSESNLRSM AAFGEGVWHA TERLDLTAGL RYGIDSADIH
YNRTGAAALS FAGDKTFRSL TPKVSVGYQA APGWRVYGLY SEGYKAGGFN RIADNSAGSI
PYSAERLRNV EVGFQADLLG KRLRLDGALF HSRTSNLQAQ VVSGLFQMLS NVGDARATGV
ELNGTWLATP DLTLRAGGAW TTSKIYSYSA PQGNLDLTGK RVPYVVPLSL RASGEYRFRP
QGMRGRLRWN VGMTYSGDMW FDAANTLRQP AYALLDTSLS WDINKHLTVV GYVDNLTDRA
VRTYAFSLGT FGTFAQYGQG RTIGLRLQAR L