Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1807 |
Symbol | |
ID | 1220645 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1958894 |
End bp | 1960969 |
Gene Length | 2076 bp |
Protein Length | 691 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637238199 |
Product | putative siderophore receptor protein |
Protein accession | NP_519928 |
Protein GI | 17546526 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0597664 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGGTGA GTACGTTGAG GGGCCTGCTG CTGGCGGGCA GCACGCTGGG CGCGGTGGGG GCGGCCGGCG CGCAGGACAG CGCCACGGCG GCCGAACCGG CGGACGTGGC GCAACTGGCG CCGGTGGTGG TGACGGGCAC CAAGCTCGAT GCCAGCGGGC AGACCGCCGA CAGCGCCACG TCGGTGGCCA GCGGTGCGCG CCTGCAGGCG GCCGGGGTGG CGCGCACCGA CGAACTGGGC AAGCTGTTTC CCGAGCTGAC GGTCACGCCC CGCAGTTCGC GCGCGTACAC GCTGTTCGGC ATGCGCGGGA CGCCGTCGTC CGACTTCTAC AGCCCGGCGG TGACGGTCTA CGTCGACGGC GTGCCGCAGG ACATGGCCTA CTTCACGCAG CCGCTGCCGG ACGTCGAGCA GGTCGAGGTC CTGCGGGGGC CGCAGGGCAC GCTGTATGGC CGCGCCGCGC AGGGCGGCGT GATCAACATC GTGACGACGA AGCCGAACAA CCGCTTCGGC GCCCAGGCGA GCGTCGACGT CAACAACCTG ACGCGGCGCA CCGATCTGTC GGTGCGCGGG CCGCTGGTCA AGGACCTCCT GTATGGCGAC GTGTCCGCCT ATTTCGACGA CCGCCCGGGC ACGCTGAAGA ACCCGGCCAC CGGTGCCGAC CAGCTCGATT CCGGCCGCGA GGCCCTGGGC CGCGCACGGC TGCGCTGGAC ACCGCGGGAC ACCGACCTCG ACGCCACGCT GTCGGTGAGC CACGACCGCT ACCGCTCGCA CGAAGAATAC TTCCAGGCCT ATGACCTGAA AGACCGGCAC GCCATCGCGT CATCGCCGTT CGATCTGACC GAACCGTCGC TCACGCGCAC TGTCACGCAG GCGGCGCTCA GCGTCGACTA CTACCTGCGG GGTTGGAAGC TGTCGTCGGT CAGCGCCTAC CAGGACCGCC GGCTCGAGCG CGTGCTGACC ACTGGCAACG CCGATCCGGA AAACCAGAAG ACCTTCTCGC AGGAACTGCG CGTCGCCACC TCCGGCGACG TCAAGCGCCC GGTGGATGGC GTGTTCGGCC TCTATTACGA GAAGCAGGCA TTCGAGCGCG ATCGGGGCAT CGCGGTGCCT GGCGTGTCGG CGTTCCTGTT CCCCGGCCCG AGCCGCAGCG AGTCGAACCT GCGCTCGATG GCCGCCTTCG GCGAGGGCGT ATGGCACGCC ACCGAGCGGC TCGACCTGAC GGCCGGGCTG CGCTACGGCA TCGACAGCGC CGACATCCAC TACAACCGCA CCGGCGCGGC CGCGCTGTCC TTCGCCGGCG ACAAGACGTT CCGCAGCCTG ACCCCGAAAG TGTCGGTGGG CTACCAGGCA GCGCCCGGGT GGCGCGTGTA CGGCCTGTAC AGCGAAGGCT ACAAGGCCGG GGGCTTCAAC CGCATCGCCG ACAACAGCGC CGGCAGCATT CCGTACAGCG CCGAGCGGCT GCGCAACGTC GAGGTCGGCT TCCAGGCCGA TCTGCTCGGC AAGCGGCTGC GGCTGGACGG CGCGCTGTTC CACAGCCGCA CCAGCAATCT GCAGGCGCAG GTCGTCTCGG GCCTGTTCCA GATGCTGAGC AACGTGGGCG ATGCCCGCGC CACCGGCGTG GAGCTGAACG GCACCTGGCT GGCCACGCCG GACCTCACGC TGCGCGCCGG CGGCGCCTGG ACCACCAGCA AGATCTACAG CTACAGCGCG CCGCAGGGCA ATCTCGACCT GACCGGCAAG CGCGTGCCCT ACGTGGTGCC GCTGAGCCTG CGCGCCTCGG GCGAATACCG CTTCCGTCCG CAAGGGATGC GGGGTCGGCT GCGATGGAAT GTCGGCATGA CCTACTCGGG CGACATGTGG TTCGACGCGG CCAACACCCT GCGCCAGCCG GCCTATGCCC TGCTCGACAC CTCGCTGAGC TGGGACATCA ACAAGCATCT GACGGTGGTC GGCTATGTCG ACAACCTGAC CGACCGCGCC GTGCGCACCT ATGCGTTTTC GCTCGGCACG TTCGGCACTT TTGCCCAATA CGGGCAGGGC CGCACGATCG GGCTGCGCCT TCAGGCCAGG CTGTGA
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Protein sequence | MGVSTLRGLL LAGSTLGAVG AAGAQDSATA AEPADVAQLA PVVVTGTKLD ASGQTADSAT SVASGARLQA AGVARTDELG KLFPELTVTP RSSRAYTLFG MRGTPSSDFY SPAVTVYVDG VPQDMAYFTQ PLPDVEQVEV LRGPQGTLYG RAAQGGVINI VTTKPNNRFG AQASVDVNNL TRRTDLSVRG PLVKDLLYGD VSAYFDDRPG TLKNPATGAD QLDSGREALG RARLRWTPRD TDLDATLSVS HDRYRSHEEY FQAYDLKDRH AIASSPFDLT EPSLTRTVTQ AALSVDYYLR GWKLSSVSAY QDRRLERVLT TGNADPENQK TFSQELRVAT SGDVKRPVDG VFGLYYEKQA FERDRGIAVP GVSAFLFPGP SRSESNLRSM AAFGEGVWHA TERLDLTAGL RYGIDSADIH YNRTGAAALS FAGDKTFRSL TPKVSVGYQA APGWRVYGLY SEGYKAGGFN RIADNSAGSI PYSAERLRNV EVGFQADLLG KRLRLDGALF HSRTSNLQAQ VVSGLFQMLS NVGDARATGV ELNGTWLATP DLTLRAGGAW TTSKIYSYSA PQGNLDLTGK RVPYVVPLSL RASGEYRFRP QGMRGRLRWN VGMTYSGDMW FDAANTLRQP AYALLDTSLS WDINKHLTVV GYVDNLTDRA VRTYAFSLGT FGTFAQYGQG RTIGLRLQAR L
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