| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1801 |
|---|
| Symbol | |
|---|
| ID | 1220639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1937772 |
|---|
| End bp | 1939340 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637238193 |
|---|
| Product | GALA protein 3 |
|---|
| Protein accession | NP_519922 |
|---|
| Protein GI | 17546520 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.578004 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0997916 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCGCTC CATCGGCCGA TGCGCAGCCG GGGCCGCCCG CGCCCGGCCC GGCACGTCCG
GCCAGGAGCG CGGCCGGCTC GTCGCTCCTG CAAGGGCTGG CGCAACTGCT GTCGCTGTGC
CAGCCCAGGC CGGCGAGACC GCTGCCCCAG CTGCCACCGG ACATCTTTCG GGAAATCGCC
CGCCGCTCCG ATCCCTTGAC CGTCCAGCGG CTGCGGGTCG CCAGCAAGCC GGTGAAAGCC
GCGATCGAGG CCGATATGCG GGAGCTGGTC ATCAAGGACC GGGCCGGCCT CGCGGGCGTT
TTGCGCGCGG GCAACTATCC GGCCCTGGAG AAGCTGACGC TTGCCGGCAC GTTCACGGAC
GACGATCTGC GGGGGCTGCC CGCATCGCTG AAGGCACTGG ACCTGAGCCG GTGCCGGGGC
TCGATCACGG CCGCCGGCAT CGCGCACCTG AGCCGTCTGC CGCTGGTCCG GTTGAATGTC
CGCAACAAGC GCATCGGCGC CGAGGGCGCG CGGCTGCTGG CGAATCACCC GACGCTGACC
TCGCTCAACG TCAGCAACGG CCGGATCGGC CCGGAAGGCG CGCAAGCGCT GGCAGCCAAC
ACGCGGCTGA CCACGCTCAA TGTCAGCGGC AACCGGATCG GCGTGGCCGG CGCGAAGGCG
CTGGCCGCCA ACCAGACGCT GCGTTCGCTC GACGTCAGCG ACAACCGCAT TGGCGACGAG
GGCGCACGCG AGCTGGCCGC CTGCACGCAG CTGACCACGC TCGATGCCAA CCGTAACGGG
ATCGGCGTCG ATGGGGCGAC GGCGCTGGCG GCCAGCCGGA CGCTCACCTC GCTCGCCATC
GGCGGCAATG AGATTGGCGA CGCGGGTGTG CTGGCGCTCG CCGCCAACGC GCGGCTGACC
ACGCTCAACG TCGAGAGCAC CGGGGTCGGC GCCGATGGGG TCAAGGCACT GGCGGCCAGC
AAGACGCTGA CCTGGCTGCG CCTTGACGGC AACGACATCG GCAATGCGGG TGCCACAGCC
CTGGCCGCCA GCACCAGCCT GACCACGCTC CATCTCGAGC ACAGCCGGAT CGGCGCGGAG
GGCGCGCAAG CCCTGGCCGC CAACACGAAG CTGACCACGC TCGATCTCGG CTACAACGAC
ATCGGCGATG CCGGCGTGCG GGCGTTGAGC GCCAATGCCA CGCTGGTCTG GCTCAGTGTG
CGCCGCAATA ACCTCGAGGA TGCGAGTGCG GTCAGCCTGG CGGCCGGCAA GACACTGACC
ACGCTCGACA TCAGCGGCAA CGGCATCCAG GATCAGGGGG CCAAGGCCTT GGCCGCCAAC
CCGACGCTGA CCACGCTCGA CGTCAGCAGC AACGACATCA AGAACGCGGG CGCGCGGGCA
CTGGCCGCCA ATGCCCGGCT GGTGTCGCTC GACCTGCGCA ACAACAGGAT GGAAGAATCT
GGTACGCGAG CGCTGCTGGC CAACCGCACG CTGTCGTCGC TCGGCGTGAG CCTCAACTGT
TGCGGCCAGC ATCTCATCGC CGAGCTGATG GCGTGGGCGA ACCACAATGG CGTGACGATG
CGGCACTGA
|
|---|
| Protein sequence | MRAPSADAQP GPPAPGPARP ARSAAGSSLL QGLAQLLSLC QPRPARPLPQ LPPDIFREIA
RRSDPLTVQR LRVASKPVKA AIEADMRELV IKDRAGLAGV LRAGNYPALE KLTLAGTFTD
DDLRGLPASL KALDLSRCRG SITAAGIAHL SRLPLVRLNV RNKRIGAEGA RLLANHPTLT
SLNVSNGRIG PEGAQALAAN TRLTTLNVSG NRIGVAGAKA LAANQTLRSL DVSDNRIGDE
GARELAACTQ LTTLDANRNG IGVDGATALA ASRTLTSLAI GGNEIGDAGV LALAANARLT
TLNVESTGVG ADGVKALAAS KTLTWLRLDG NDIGNAGATA LAASTSLTTL HLEHSRIGAE
GAQALAANTK LTTLDLGYND IGDAGVRALS ANATLVWLSV RRNNLEDASA VSLAAGKTLT
TLDISGNGIQ DQGAKALAAN PTLTTLDVSS NDIKNAGARA LAANARLVSL DLRNNRMEES
GTRALLANRT LSSLGVSLNC CGQHLIAELM AWANHNGVTM RH
|
|---|
| |