| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1730 |
|---|
| Symbol | |
|---|
| ID | 1220568 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1851224 |
|---|
| End bp | 1851994 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637238122 |
|---|
| Product | dehydrogenase/reductase oxidoreductase protein |
|---|
| Protein accession | NP_519851 |
|---|
| Protein GI | 17546449 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAC CCCAATCCCC CACCCCCATC GCCCTGGTCA CCGGCGGCAG CCGCGGCCTC
GGCAGGAACA TGGTGCAGAA GCTGGCCCGC GGCGGCACCG ATGTGATCTT CACCTACCGC
AGCAACCAGG CCGAGGCGCA GGCGCTGGTC GCGGAACTGG CCGCGCTCGG ACGCCGCGCC
GCCGCGCTGC AACTGGACGC CGGCCAGATC GCCACCTTCG CCGCATTCGC CGATGCGGTG
CGCGGCGTGC TGGCGCAATG GCAGCGCGAG CGCATCGACG CGCTCGTCAA CAATGCCGGC
ATCGGCATCC ACGCCAGTCT GGCCGAGATG ACCGAAGCGC AGTTCGATGC GCTGATGAAC
GTGCACTTCA AGGGCGTGTT TTTCCTGACG CAGGCGCTGC TGCCGCTGAT TGCCGATGGC
GGGCGCATCG TCAACATTTC GTCGGGGCTG ACGCGCTTTG CCTTCGTGGG CTACGGCGCC
TACGCGGCGA TGAAGGGCGC GGTCGAGGTG CTGACGAAAT ACATGGCGAA GGAACTCGGC
CCGCGCGGCA TTGCGGTGAA CGTGGTGGCG CCGGGGGCGA TCGAGACCGA CTTCGGCGGT
GGCCGGGTGC GCGATGACGC AAACCTGAAC GCCATGGTGG CCGCGCAGAC GGCGCTGGGC
CGCGTGGGCC TGCCGGACGA TATCGGCGGG GTGGTGGCGT CGCTGCTGGC GCCGGACAAC
CGCTGGATCA ACGCGCAGCG GATCGAGGCG TCGGGCGGGA TGTTCCTCTA G
|
|---|
| Protein sequence | MTQPQSPTPI ALVTGGSRGL GRNMVQKLAR GGTDVIFTYR SNQAEAQALV AELAALGRRA
AALQLDAGQI ATFAAFADAV RGVLAQWQRE RIDALVNNAG IGIHASLAEM TEAQFDALMN
VHFKGVFFLT QALLPLIADG GRIVNISSGL TRFAFVGYGA YAAMKGAVEV LTKYMAKELG
PRGIAVNVVA PGAIETDFGG GRVRDDANLN AMVAAQTALG RVGLPDDIGG VVASLLAPDN
RWINAQRIEA SGGMFL
|
|---|
| |