Gene RSc1718 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1718 
Symbol 
ID1220556 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1837268 
End bp1837978 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content68% 
IMG OID637238110 
ProductABC transporter ATP-binding protein 
Protein accessionNP_519839 
Protein GI17546437 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4181] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.529173 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.324708 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTCTT CCGCTACCTG GGTGATTGAA GTCGATTCGC TGCACAAGAC CGTGCGCGAC 
GCCACCGGCG AGTTGCCTAT TTTGAGCGAT GTCGGGTTTC GTGTGGAAGC CGGGGAGACG
CTGGCCATCG TTGGTGCCTC GGGTTCGGGC AAGTCGACCC TGCTGGGGCT GCTGGCGGGG
CTGGACCTGC CGACCTCGGG CTCGGTCAGG CTGCTTGGCC ACGATCTGTT CGGCCTCGAC
GAAGACGGTC GCGCGGCGGT GCGCGGCAGC CATGTCGGCT TCGTGTTCCA GTCGTTCCAG
CTGTTGCCGC ACCTGACTGC GCTGGAGAAC GTGATGTTGC CGCTGGAGCT GCAGGGCGAC
GTGGGCGCCG CCGACATGCA GCGTCGCGCC ACCGTGCTGC TGGAGCGCGT CGGCCTGGGG
GCGCGGTTGT CGCACTATCC GAAGACGCTG TCGGGGGGCG AACAGCAGCG CGTGGCGCTG
GCGCGCGCGT TTGTCACCGA GCCCGACATC CTGTTCGCCG ATGAGCCCAC CGGGAGCCTC
GACACCGCCA CCGGCGAAGC CGTGATCGCG CTGATGTTCG CGCTCAACCG CGGTGCCGGC
TCGACGCTGG TGCTGGTCAC GCACGACCGC TCGGTCGCGG CGCGATGCAG TCGCATCCTG
ACCATCGAGG CCGGCCACCT GGTTGGCGAT GAGACCGTTA CCGAACTCTG A
 
Protein sequence
MSSSATWVIE VDSLHKTVRD ATGELPILSD VGFRVEAGET LAIVGASGSG KSTLLGLLAG 
LDLPTSGSVR LLGHDLFGLD EDGRAAVRGS HVGFVFQSFQ LLPHLTALEN VMLPLELQGD
VGAADMQRRA TVLLERVGLG ARLSHYPKTL SGGEQQRVAL ARAFVTEPDI LFADEPTGSL
DTATGEAVIA LMFALNRGAG STLVLVTHDR SVAARCSRIL TIEAGHLVGD ETVTEL