Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1718 |
Symbol | |
ID | 1220556 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1837268 |
End bp | 1837978 |
Gene Length | 711 bp |
Protein Length | 236 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637238110 |
Product | ABC transporter ATP-binding protein |
Protein accession | NP_519839 |
Protein GI | 17546437 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4181] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.529173 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.324708 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTCTT CCGCTACCTG GGTGATTGAA GTCGATTCGC TGCACAAGAC CGTGCGCGAC GCCACCGGCG AGTTGCCTAT TTTGAGCGAT GTCGGGTTTC GTGTGGAAGC CGGGGAGACG CTGGCCATCG TTGGTGCCTC GGGTTCGGGC AAGTCGACCC TGCTGGGGCT GCTGGCGGGG CTGGACCTGC CGACCTCGGG CTCGGTCAGG CTGCTTGGCC ACGATCTGTT CGGCCTCGAC GAAGACGGTC GCGCGGCGGT GCGCGGCAGC CATGTCGGCT TCGTGTTCCA GTCGTTCCAG CTGTTGCCGC ACCTGACTGC GCTGGAGAAC GTGATGTTGC CGCTGGAGCT GCAGGGCGAC GTGGGCGCCG CCGACATGCA GCGTCGCGCC ACCGTGCTGC TGGAGCGCGT CGGCCTGGGG GCGCGGTTGT CGCACTATCC GAAGACGCTG TCGGGGGGCG AACAGCAGCG CGTGGCGCTG GCGCGCGCGT TTGTCACCGA GCCCGACATC CTGTTCGCCG ATGAGCCCAC CGGGAGCCTC GACACCGCCA CCGGCGAAGC CGTGATCGCG CTGATGTTCG CGCTCAACCG CGGTGCCGGC TCGACGCTGG TGCTGGTCAC GCACGACCGC TCGGTCGCGG CGCGATGCAG TCGCATCCTG ACCATCGAGG CCGGCCACCT GGTTGGCGAT GAGACCGTTA CCGAACTCTG A
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Protein sequence | MSSSATWVIE VDSLHKTVRD ATGELPILSD VGFRVEAGET LAIVGASGSG KSTLLGLLAG LDLPTSGSVR LLGHDLFGLD EDGRAAVRGS HVGFVFQSFQ LLPHLTALEN VMLPLELQGD VGAADMQRRA TVLLERVGLG ARLSHYPKTL SGGEQQRVAL ARAFVTEPDI LFADEPTGSL DTATGEAVIA LMFALNRGAG STLVLVTHDR SVAARCSRIL TIEAGHLVGD ETVTEL
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