| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1712 |
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| Symbol | clpX |
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| ID | 1220548 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1829064 |
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| End bp | 1830338 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637238102 |
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| Product | ATP-dependent protease ATP-binding subunit ClpX |
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| Protein accession | NP_519833 |
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| Protein GI | 17546431 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
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| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00711011 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0237763 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCGGACA AGAAAGGCTC GACTGGCGAA AAGCTGCTGT ACTGCTCGTT CTGCGGCAAG
AGCCAGCATG AAGTCAAGAA ACTGATTGCC GGCCCCTCGG TCTTCATCTG CGATGAATGT
ATCGACCTGT GCAATGAAAT CATCCGGGAC GAGGCCGCGA TCTCCGAGAA GGAGGGCGGG
CTGGCGGTCA AATCCGACCT GCCGACCCCG CACGAGATTC GCCAGAGCCT GGATCAATAC
GTGATCGGCC AGGAGCAGGC CAAGAAGATC CTGGCGGTTG CGGTCTATAA CCATTACAAG
CGCTTGAAGC ATCTCGGCAA GAAGGATGAT GTCGAGCTGT CCAAGAGCAA CATCCTGCTC
ATCGGGCCGA CCGGCTCGGG CAAGACGCTG CTGGCGCAGA CGCTGGCTCG CTTGCTGAAC
GTGCCGTTCG TCATCGCCGA CGCCACCACG CTGACCGAAG CCGGCTACGT GGGCGAGGAC
GTCGAGAACA TCATCCAGAA GCTGCTGCAG AACTGCAATT ACGAGGTCGA CAAGGCACAG
CGTGGCATTG TCTACATCGA TGAGATCGAC AAGATTTCGC GCAAGTCCGA CAACCCGTCC
ATCACCCGCG ACGTTTCCGG GGAAGGCGTG CAGCAGGCCC TGCTGAAGCT GATTGAAGGG
ACGATGGCCT CGGTGCCGCC GCAGGGCGGG CGCAAGCACC CGAACCAGGA TTTCCTCCAG
GTCGACACTA CCAATATCCT GTTTATCTGC GGCGGTGCGT TCGATGGTCT CGAGAAGATC
ATCACGCAGC GCTCGGACAA GTCCGGCATC GGCTTCGGCG CCGAGGTCAA GAGCAAGGAA
GAGCGGGACG TCAACGAAGT GCTGCCGCAG GTAGAGCCGG AAGACCTGAT CAAGTTCGGC
CTGATTCCCG AACTGATCGG CCGCCTGCCC GTGGTGGCGA CGCTGGCCAA GCTGGACGAG
GCCGCGCTGA TGGAGATCCT GGTCGAGCCG AAGAATGCAA TCGTCAAGCA GTATCAAAAA
CTGCTGGCCA TGGAAGGGGT GGAGCTGGAA ATCCGTCCGA GCGCGCTGAC GGCGATTGCC
CGCAAGGCGA TCAAGCGCAA GACGGGGGCG CGCGGATTGC GCTCCATCGT CGAGCACGCG
CTGATGGATG TGATGTACGA CCTTCCCAAC CACAAGGGTG TGCAGAAGGT GGTGATCGAC
GAGAGCACGA TCGCCGGCGA CGGCAAGCCC TTGCTGATGT ACGAAGAGCA ACCCAAGGTT
GCAGGTTCCA ACTGA
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| Protein sequence | MADKKGSTGE KLLYCSFCGK SQHEVKKLIA GPSVFICDEC IDLCNEIIRD EAAISEKEGG
LAVKSDLPTP HEIRQSLDQY VIGQEQAKKI LAVAVYNHYK RLKHLGKKDD VELSKSNILL
IGPTGSGKTL LAQTLARLLN VPFVIADATT LTEAGYVGED VENIIQKLLQ NCNYEVDKAQ
RGIVYIDEID KISRKSDNPS ITRDVSGEGV QQALLKLIEG TMASVPPQGG RKHPNQDFLQ
VDTTNILFIC GGAFDGLEKI ITQRSDKSGI GFGAEVKSKE ERDVNEVLPQ VEPEDLIKFG
LIPELIGRLP VVATLAKLDE AALMEILVEP KNAIVKQYQK LLAMEGVELE IRPSALTAIA
RKAIKRKTGA RGLRSIVEHA LMDVMYDLPN HKGVQKVVID ESTIAGDGKP LLMYEEQPKV
AGSN
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