Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1709 |
Symbol | mnmC |
ID | 1220545 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1824638 |
End bp | 1826611 |
Gene Length | 1974 bp |
Protein Length | 657 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 637238099 |
Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
Protein accession | NP_519830 |
Protein GI | 17546428 |
COG category | [E] Amino acid transport and metabolism [S] Function unknown |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) [COG4121] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0318232 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTCGCG GCCTCATTCT CGCCACACCT CAACTGCCCC CGGACGGCAC GCCGTTCTCC GCCCGGTACG ACGACGTCTA CCACAGCACC GAAGGCGGCC TGGCGCAGGC GCATCACGTG TTCCTGGGCG GCAACGGCCT GCCCGGCGGG TGGCAGGGCA AGCGCAGCTT CACCATCGTG GAGACCGGCT TCGGGCAGGG CCTGAACTTC CTGGCCACCT GGGCGGCCTG GCGCGACGAT CCGCAGCGCT GCGGGCGTCT CGATTTCGTT TCGGTCGAAA AGCACCCGTT CGATCGCGCC GGGCTGGCCC TCGTGCACGC GCAGGAGGGC GCGCTGGCCT CGCTCGCCGA GGCGTTGCGT CAGGCGTGGC CGGTGCCGGT GCCGGGCGTG CACCGCCTCG TCTTCGATGC GGGGCGTGTG ACGCTCACCC TGATGCTGGG GGACGCGGAA ACGCTGCTGC CGCAGCTGTC CTGCGCCGCC GATGCCTTCT ACCTGGACGG CTTCTCACCC GCCAAGAACC CTGATCTGTG GCAGCCGGGC GTGTTCAAGC AGCTCGCCCG CATCGCGCGC GGCGGTGCGA CGCTGGCAAC CTATACGGCG GCCGGCGCCG TGCGCCACGG CTTGCGCGAG GCGGGTTTCG AGGTGCGCAA GGCGCCCGGC TTCGGCCGCA AGCGCGACAT GACCGTCGCC GCATTCCCGA CGCACTGGCG GACCCGGCGC GGGCCGGCGG AGGCACCGGT CTGGCCGGAG CGCCACGCCA TCGTGCTGGG CGCCGGGCTG GCGGGCTGCT CGGTGGCGGA GCGGCTGGCC GCGCGCGGCT GGCGCATCAC CCTGATCGAC GAGCACGAGG CGCCGGCAGG CGGCGCCTCG GCGCACCGGG CGGCGGCCAT GCATCCGCAC GTGTCGATCG ATGACAGCGT GCTCTCGCGC CTGTCCCGCG CGGGCAACCT GCTGGCGCGT CGCCATTGGG AGGCGCTCGA CCGCGCCGGC TTTGCCACCG GTTTCCACCC GACCGGCGTG CTGCAGTTGG CCGAGCACGC CGACGATGCC GCCGAGCAGC AGCGCATCGT CCAGGCGCTC GGTTTCCCGG CCGATTTCAT CGCGTGGCTG GACGCCGCCC GCGCGGCCGA TCGTGTCGGC GCGGGCGTGC CGCAGGGGGG CTGGTGGTTC GCGCAGGCCG GCTGGGTGGC GCCGCCCGAC ATCTGCCGCG CAGCCCTCGC CGCGGCAGGT GAGGCCGTCG AGCTGCGGTG GCGCACCCGG ATCGAATCCC TGCTGCGGCA TGACGCCGGG TGGCGGGCCT GCGACGCGCA GGGCAACGTG ATTGCGCACG CACCGGTCGT CGTGCTCGCC AACAGTCTGG ATGCGGTCCG GCTGGCGCCG CTGGCATCCG CCGCGCTCAA GCCGGTGCGC GGCCAGCTGA CGGATGTGCC GGTTGCCGCG CTCGAAGACG GCGTGCCATG GCCTCGCGCC GTCGTCTGCG GCGACGGCTA TCTGTTGCCC CGGGAGCGCG GAGCCCCGAC GGTGCGCGTG GGTTCCTCTT TCCAGCCGGG CGAGACCGAT CCCGACGCGC GTACCGCCGA CCACGCCGCC AACCTGCGCC GGCTGGCCGG GCTGCAGCCC GCGCATGCCG CCGCCCTGGC CCGCGTGGAC CCGGCGCGGC TCCTTGGCTA CGTGGGCGTG CGCTGCGTCT CCGCCAACCG GTTGCCGCTG ATTGGCGCCG TGGCGGACGA GGCAGCGATC ATGGCGCCCG GCTTCCGCTT GCGCGGACCG CATGCCGCGC TGCCGCGCGT GCCTGGGCTC TATGCCGCGC TGGCCTATGG CTCACGCGGC CTCACGTGGT CGGTGCTGGG CGCGGAGCTG CTCGCGGCGC AGATCGACGG CGGCCCGCTT CCGCTCGAAT CCGAACTGGC AGCCGCATTG GACCCCGGTC GTTTCCTGAT GCGGGCGTTG CGCCACGGCA AGCACGCGGC ATGA
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Protein sequence | MPRGLILATP QLPPDGTPFS ARYDDVYHST EGGLAQAHHV FLGGNGLPGG WQGKRSFTIV ETGFGQGLNF LATWAAWRDD PQRCGRLDFV SVEKHPFDRA GLALVHAQEG ALASLAEALR QAWPVPVPGV HRLVFDAGRV TLTLMLGDAE TLLPQLSCAA DAFYLDGFSP AKNPDLWQPG VFKQLARIAR GGATLATYTA AGAVRHGLRE AGFEVRKAPG FGRKRDMTVA AFPTHWRTRR GPAEAPVWPE RHAIVLGAGL AGCSVAERLA ARGWRITLID EHEAPAGGAS AHRAAAMHPH VSIDDSVLSR LSRAGNLLAR RHWEALDRAG FATGFHPTGV LQLAEHADDA AEQQRIVQAL GFPADFIAWL DAARAADRVG AGVPQGGWWF AQAGWVAPPD ICRAALAAAG EAVELRWRTR IESLLRHDAG WRACDAQGNV IAHAPVVVLA NSLDAVRLAP LASAALKPVR GQLTDVPVAA LEDGVPWPRA VVCGDGYLLP RERGAPTVRV GSSFQPGETD PDARTADHAA NLRRLAGLQP AHAAALARVD PARLLGYVGV RCVSANRLPL IGAVADEAAI MAPGFRLRGP HAALPRVPGL YAALAYGSRG LTWSVLGAEL LAAQIDGGPL PLESELAAAL DPGRFLMRAL RHGKHAA
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