Gene RSc1709 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1709 
SymbolmnmC 
ID1220545 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1824638 
End bp1826611 
Gene Length1974 bp 
Protein Length657 aa 
Translation table11 
GC content74% 
IMG OID637238099 
Product5-methylaminomethyl-2-thiouridine methyltransferase 
Protein accessionNP_519830 
Protein GI17546428 
COG category[E] Amino acid transport and metabolism
[S] Function unknown 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein 
TIGRFAM ID[TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0318232 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTCGCG GCCTCATTCT CGCCACACCT CAACTGCCCC CGGACGGCAC GCCGTTCTCC 
GCCCGGTACG ACGACGTCTA CCACAGCACC GAAGGCGGCC TGGCGCAGGC GCATCACGTG
TTCCTGGGCG GCAACGGCCT GCCCGGCGGG TGGCAGGGCA AGCGCAGCTT CACCATCGTG
GAGACCGGCT TCGGGCAGGG CCTGAACTTC CTGGCCACCT GGGCGGCCTG GCGCGACGAT
CCGCAGCGCT GCGGGCGTCT CGATTTCGTT TCGGTCGAAA AGCACCCGTT CGATCGCGCC
GGGCTGGCCC TCGTGCACGC GCAGGAGGGC GCGCTGGCCT CGCTCGCCGA GGCGTTGCGT
CAGGCGTGGC CGGTGCCGGT GCCGGGCGTG CACCGCCTCG TCTTCGATGC GGGGCGTGTG
ACGCTCACCC TGATGCTGGG GGACGCGGAA ACGCTGCTGC CGCAGCTGTC CTGCGCCGCC
GATGCCTTCT ACCTGGACGG CTTCTCACCC GCCAAGAACC CTGATCTGTG GCAGCCGGGC
GTGTTCAAGC AGCTCGCCCG CATCGCGCGC GGCGGTGCGA CGCTGGCAAC CTATACGGCG
GCCGGCGCCG TGCGCCACGG CTTGCGCGAG GCGGGTTTCG AGGTGCGCAA GGCGCCCGGC
TTCGGCCGCA AGCGCGACAT GACCGTCGCC GCATTCCCGA CGCACTGGCG GACCCGGCGC
GGGCCGGCGG AGGCACCGGT CTGGCCGGAG CGCCACGCCA TCGTGCTGGG CGCCGGGCTG
GCGGGCTGCT CGGTGGCGGA GCGGCTGGCC GCGCGCGGCT GGCGCATCAC CCTGATCGAC
GAGCACGAGG CGCCGGCAGG CGGCGCCTCG GCGCACCGGG CGGCGGCCAT GCATCCGCAC
GTGTCGATCG ATGACAGCGT GCTCTCGCGC CTGTCCCGCG CGGGCAACCT GCTGGCGCGT
CGCCATTGGG AGGCGCTCGA CCGCGCCGGC TTTGCCACCG GTTTCCACCC GACCGGCGTG
CTGCAGTTGG CCGAGCACGC CGACGATGCC GCCGAGCAGC AGCGCATCGT CCAGGCGCTC
GGTTTCCCGG CCGATTTCAT CGCGTGGCTG GACGCCGCCC GCGCGGCCGA TCGTGTCGGC
GCGGGCGTGC CGCAGGGGGG CTGGTGGTTC GCGCAGGCCG GCTGGGTGGC GCCGCCCGAC
ATCTGCCGCG CAGCCCTCGC CGCGGCAGGT GAGGCCGTCG AGCTGCGGTG GCGCACCCGG
ATCGAATCCC TGCTGCGGCA TGACGCCGGG TGGCGGGCCT GCGACGCGCA GGGCAACGTG
ATTGCGCACG CACCGGTCGT CGTGCTCGCC AACAGTCTGG ATGCGGTCCG GCTGGCGCCG
CTGGCATCCG CCGCGCTCAA GCCGGTGCGC GGCCAGCTGA CGGATGTGCC GGTTGCCGCG
CTCGAAGACG GCGTGCCATG GCCTCGCGCC GTCGTCTGCG GCGACGGCTA TCTGTTGCCC
CGGGAGCGCG GAGCCCCGAC GGTGCGCGTG GGTTCCTCTT TCCAGCCGGG CGAGACCGAT
CCCGACGCGC GTACCGCCGA CCACGCCGCC AACCTGCGCC GGCTGGCCGG GCTGCAGCCC
GCGCATGCCG CCGCCCTGGC CCGCGTGGAC CCGGCGCGGC TCCTTGGCTA CGTGGGCGTG
CGCTGCGTCT CCGCCAACCG GTTGCCGCTG ATTGGCGCCG TGGCGGACGA GGCAGCGATC
ATGGCGCCCG GCTTCCGCTT GCGCGGACCG CATGCCGCGC TGCCGCGCGT GCCTGGGCTC
TATGCCGCGC TGGCCTATGG CTCACGCGGC CTCACGTGGT CGGTGCTGGG CGCGGAGCTG
CTCGCGGCGC AGATCGACGG CGGCCCGCTT CCGCTCGAAT CCGAACTGGC AGCCGCATTG
GACCCCGGTC GTTTCCTGAT GCGGGCGTTG CGCCACGGCA AGCACGCGGC ATGA
 
Protein sequence
MPRGLILATP QLPPDGTPFS ARYDDVYHST EGGLAQAHHV FLGGNGLPGG WQGKRSFTIV 
ETGFGQGLNF LATWAAWRDD PQRCGRLDFV SVEKHPFDRA GLALVHAQEG ALASLAEALR
QAWPVPVPGV HRLVFDAGRV TLTLMLGDAE TLLPQLSCAA DAFYLDGFSP AKNPDLWQPG
VFKQLARIAR GGATLATYTA AGAVRHGLRE AGFEVRKAPG FGRKRDMTVA AFPTHWRTRR
GPAEAPVWPE RHAIVLGAGL AGCSVAERLA ARGWRITLID EHEAPAGGAS AHRAAAMHPH
VSIDDSVLSR LSRAGNLLAR RHWEALDRAG FATGFHPTGV LQLAEHADDA AEQQRIVQAL
GFPADFIAWL DAARAADRVG AGVPQGGWWF AQAGWVAPPD ICRAALAAAG EAVELRWRTR
IESLLRHDAG WRACDAQGNV IAHAPVVVLA NSLDAVRLAP LASAALKPVR GQLTDVPVAA
LEDGVPWPRA VVCGDGYLLP RERGAPTVRV GSSFQPGETD PDARTADHAA NLRRLAGLQP
AHAAALARVD PARLLGYVGV RCVSANRLPL IGAVADEAAI MAPGFRLRGP HAALPRVPGL
YAALAYGSRG LTWSVLGAEL LAAQIDGGPL PLESELAAAL DPGRFLMRAL RHGKHAA