| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1628 |
|---|
| Symbol | rluD |
|---|
| ID | 1220463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1748919 |
|---|
| End bp | 1749995 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637238017 |
|---|
| Product | ribosomal large subunit pseudouridine synthase D protein |
|---|
| Protein accession | NP_519749 |
|---|
| Protein GI | 17546347 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGACG ACGCAGTGGC CGACCTCCCA GCCGCCTCGC AAGACGCCGA CGATACGCTC
GACGACGAGG CGCTCGACCT GTCCGCGCCC GGCGCGGGGC AGGCCATCGA ACCCATCATC
GTGGAGATTC CCGAGGCGCT GCACGGCGAG CGGCTCGACA AGGCGCTCGC CAAGCTGCTG
CCCGATTACT CCCGCAGCCG CCTGCAGCAA TGGATCGACG CCGGCGCCGT GCGCGTGGGC
GGGGCTGCGG TGCGGCCGCG CGCGGCGGTT TGCGGCGGCG ACCGCATCGA GGTCGTCCCG
CAGCGCGCCG ACGACGAGAA CGCCTTCGTC GCCGAGCCCG TCGACCTGGA TGTCGTCTAT
GAAGACGACA CGCTGCTGGT GATCAACAAG CCCGCCGGCC TGGTGGTCCA CCCCGCTGCC
GGCAACTGGA GCGGCACCGT GCTCAACGGG CTGCTGCACC GCTATCCGCA GGCGGCCGGC
CTGCCGCGCG CGGGGATCGT CCACCGGCTC GACAAGGAGA CCTCCGGGTT GATGGTGGTC
GCCCGCACGC TGCCCGCGCA GACGGATCTC GTACGCCAGT TGCAGGCCCG CACCGTCAAG
CGGACCTACC TGGCGCTGGT CTGGGGCGAG ACGCCCGAGG CTGGCACCAT CGATGCCCCG
ATCGGGCGCG ACCCGCGCGA CCGCACCCGC ATGGCCATCA TCGAGACCGC CAGCGGCAAG
CCGGCGCGCA CGCATTTCAA GACGCTGGAC GTGGTCGACC TCGGGCGCGC GCAGGTGTCG
CTGGTGCAGT GCCAGCTGGA AACGGGGCGC ACGCACCAGA TTCGCGTGCA CTTCGAGTCC
GAGGGCCACC CGCTGCTGGG CGACCCGGTC TATACGCGCA ACTTCCGCCG GGGCCGGCCG
CAGACGATCA AGGCGCCGCT GCCGGCACCG TTTGCGCGGC AGGCGCTGCA TGCGGTGCGC
CTGGGGCTGG TGCATCCCGC GTCGGGCCAG TCGGTGCACT GGCATGCCGG TGTGCCCGAC
GACCTGGCCG AACTGATGGA CGCACTGGAG ATGGACCCCG ATGTCGATCT CGTCTGA
|
|---|
| Protein sequence | MSDDAVADLP AASQDADDTL DDEALDLSAP GAGQAIEPII VEIPEALHGE RLDKALAKLL
PDYSRSRLQQ WIDAGAVRVG GAAVRPRAAV CGGDRIEVVP QRADDENAFV AEPVDLDVVY
EDDTLLVINK PAGLVVHPAA GNWSGTVLNG LLHRYPQAAG LPRAGIVHRL DKETSGLMVV
ARTLPAQTDL VRQLQARTVK RTYLALVWGE TPEAGTIDAP IGRDPRDRTR MAIIETASGK
PARTHFKTLD VVDLGRAQVS LVQCQLETGR THQIRVHFES EGHPLLGDPV YTRNFRRGRP
QTIKAPLPAP FARQALHAVR LGLVHPASGQ SVHWHAGVPD DLAELMDALE MDPDVDLV
|
|---|
| |