| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1603 |
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| Symbol | lpdA |
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| ID | 1220436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1722543 |
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| End bp | 1724327 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637237990 |
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| Product | dihydrolipoamide dehydrogenase |
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| Protein accession | NP_519724 |
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| Protein GI | 17546322 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
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| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00100727 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.394901 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTGG TGGAAATCAA GGTGCCGGAC ATCGGCGACT ACAAGGACGT GGACGTCATC
GAAGTGATGG TGAAGGCGGG CGACGTCGTC GCCGTCGACC AGTCGCTGAT CACGCTGGAG
ACCGACAAGG CGACCATGGA CGTGCCGGCC GACGTGGCAG GCAGGATCGT CGAGGTCAAG
ATTAAGGTGG GCGACAAGGC CAGCCAGGGC ACCGTCATCG CCACGGTGGA AGCCGGTGCC
GCGGCCGCGG CGCCCGCGCC CACGCAAGCC CCGGCTCCGG CGGCCGCACC CGCTGCCGCT
CCGGCCGCCT CGGCGCCCGC GCCGCAGGCC GCGAAGCACG GCGGCAGCGC CGATCTCGAA
TGCGACATGC TCGTCCTGGG CTCCGGCCCG GGCGGCTACT CGGCCGCTTT CCGCAGCGCC
GACCTCGGCA TGAACACGGT GCTGGTCGAA CGCTTCGGCA CGCTGGGCGG CGTCTGCCTG
AATGTGGGGT GCATCCCGTC CAAGGCGCTG CTGCACACGG CGGCCATCAT GGACGAAGTC
AAGGCGATGG CCAGCCACGG CATCGTCTAC AGCGAGCCGA AGGTCGATCT GGACCAACTG
CGCAAGCACA AGGAAACCGT GGTCGGCAAG CTGACCGGCG GCCTGGCCGG CATGGCCAAG
TCGCGCAAGG TGCAAGTCGT GCGCGGCGTG GGCACGTTCC TCGACCCGAA CCATCTGGAA
GTTCAGCTGA CCAGCGGTGA AGGCAAGCAG GCCACCGGCG AGAAGAAGGT CATCCGCTTC
GCCAAGGCCA TCATCGCCGC CGGCAGCGAG TCGGTGAAGC TGCCGTTCAT TCCGGAAGAC
CCGCGCATCG TCGACTCCAC CGGCGCGCTG GAGCTGCGCC AGGTGCCGGG CAAGATGCTG
GTCATCGGCG GCGGCATCAT CGGCCTGGAA ATGGCGACGG TTTACAGCAC GCTGGGTGCG
CGCATCGACG TGGTGGAGAT GCTCGATAGC CTGATGAACG GCGCCGACCG CGATCTCGTC
AAGGTGTGGG ACAAGATGAA CAAGTCCCGC TTCGACAAGG TCATGCTCAA GACCAAGACG
GTGGGTGTCG AGGCCAAGCC GGACGGCATT TACGTCAGGT TCGAGGGCGA GCAGGCGCCC
GCCGAGCCGC AGCGCTATGA CATGGTGCTG GTGGCCGTGG GCCGCAGCCC GAACGGCAAG
CGCATCGGCG CGGAAAAGGC CGGCGTGGCC GTGACCGACC GCGGCTTCAT CGACGTGGAC
AAGCAGCAGC GCACCAACGT GCCGCATATC TATGCGATCG GCGACATCGT CGGGCAGCCG
ATGCTGGCGC ACAAGGCGGT GCACGAGGCC CACGTCGCGG CGGAGGCCGC GCATGGCGAG
AAGGCCTACT TCGATGCCAA GCAGATTCCG TCGGTGGCCT TCACCGATCC GGAAGTGGCC
TGGGCCGGCC TGACCGAAGA CCAGTGCAAG GCGCAGGGCA TCAAGTACGG CAAGGGCGTG
TTCCCGTGGG CCGCTTCGGG CCGCGCCATC GCCAACGGCC GCGATGAGGG CTTCACCAAG
GTCATCTTCG ACGAAGAGAC GCACCGGATT ATCGGCGGCG GCATCGTCGG CACGCATGCA
GGCGACCTGA TCAGCGAGAT CTGCTTGGCG ATCGAGATGG GCGCGGACGC GATCGACATC
GGCAAGACCA TCCACCCGCA TCCGACGCTG GGCGAGTCGG TTGGCATGGC GGCGGAAATC
TACGAGGGCG TCTGCACGGA CGTGCCGCCG GCTCGCAAGC GCTGA
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| Protein sequence | MSVVEIKVPD IGDYKDVDVI EVMVKAGDVV AVDQSLITLE TDKATMDVPA DVAGRIVEVK
IKVGDKASQG TVIATVEAGA AAAAPAPTQA PAPAAAPAAA PAASAPAPQA AKHGGSADLE
CDMLVLGSGP GGYSAAFRSA DLGMNTVLVE RFGTLGGVCL NVGCIPSKAL LHTAAIMDEV
KAMASHGIVY SEPKVDLDQL RKHKETVVGK LTGGLAGMAK SRKVQVVRGV GTFLDPNHLE
VQLTSGEGKQ ATGEKKVIRF AKAIIAAGSE SVKLPFIPED PRIVDSTGAL ELRQVPGKML
VIGGGIIGLE MATVYSTLGA RIDVVEMLDS LMNGADRDLV KVWDKMNKSR FDKVMLKTKT
VGVEAKPDGI YVRFEGEQAP AEPQRYDMVL VAVGRSPNGK RIGAEKAGVA VTDRGFIDVD
KQQRTNVPHI YAIGDIVGQP MLAHKAVHEA HVAAEAAHGE KAYFDAKQIP SVAFTDPEVA
WAGLTEDQCK AQGIKYGKGV FPWAASGRAI ANGRDEGFTK VIFDEETHRI IGGGIVGTHA
GDLISEICLA IEMGADAIDI GKTIHPHPTL GESVGMAAEI YEGVCTDVPP ARKR
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