| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1564 |
|---|
| Symbol | |
|---|
| ID | 1220395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1679169 |
|---|
| End bp | 1681076 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637237949 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_519685 |
|---|
| Protein GI | 17546283 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0204] 1-acyl-sn-glycerol-3-phosphate acyltransferase |
|---|
| TIGRFAM ID | [TIGR00530] 1-acyl-sn-glycerol-3-phosphate acyltransferases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAT CGAGCCAGTT TTCCCTGCTG AAGCAGCGCC GCTTCGCCCC GTTTTTCTGG
ACCCAGTTCC TGGGCGCCAT GAACGACAAC GTGTTCAAGG TCGCCTTCTC ATCGCTGGTC
ACCTATCACG CCGCGCTGTT CGGCAACGCG GACCCGGCCT CGGCAGCGTT CCTGATCTCG
GCGATCTTCA TCGCGCCGTT CGTGCTGCTG TCGGCCACCA GCGGGCAGAT CGCCGACCGC
ATGGACAAGG CCCGGCTGAT CCGCCTGGTG AAGACGCTGG AGATCGCCAT CATGGCGATC
GGCTGCGCGG GCTTTGCGCT GCGCCGGGTC GAGCTGCTGT ACCTGTGTAC CTTCCTGATG
GGCGTGCACT CGACGCTGTT CGGGCCGGTC AAATACGCCT ACCTGCCGCA GCACCTGCAA
CCGTCCGAAC TGGTGGGCGG CAACGGCCTG GTGGAGATGG GCACCTTCGT CGCCATCCTG
CTCGGCACCA TCGGCGGCGG CGAACTGGCC AACCTGACGC GCAACGGCGA GCTGGTCGGC
CCGGCGCTGA CCGGCATCGC TTGCCTGGCG ATCGCCGTCG GCGGCTGGCT GACGGCGCGC
GGCGTGCCCG TGTCTCCGGC CTCGCAGCCG GATCTGCGCA TCAACTGGAA CCCCGTCTCC
GAGACCTGGC GCAACCTGAA GCTGGCCAGC AACCAGCGCG CGGTGTTCCT GAGCCTGCTC
GGCATCTCGT GGCTGTGGTT CGTCGGCGCG ACCTTCCTGA CCTCATTCTT CGCCTTTGCT
CGCAACGTGC TCGGCGGCGA TCAGAACGTG GTGACGCTGC TGCTGGCGGT GTTCTCGATC
GGCATCGGCC TGGGCTCGGT GCTGTGCGAA AAACTCTCGG GCCGCATGGT GGAGGTCGGC
CTGGTGCCGT TCGGCTCGAT CGGCATGACG GTGTTCGCGG TGGACCTGTA CTTCGCCTCG
CATGCCGAGG CGCTGGTCGC GCACGATGCG CTGACGGGCG TGGCCGGCTT CCTGCAGAAC
CATCGCCACT GGCGCGTGCT GGCCGACCTG TTCCTGCTGG CGATGTTCGG CGGCTTCTAC
AGCGTGCCGC TGTACGCGCT GATCCAGAGC CGCTGCGAGC CGACGCACCG CGCGCGCATC
ATCGCCGCCA ACAACATCCT CAACGCGCTG TTCATGATCG CTTCGGCGGT GCTGGCGATG
GTGCTCACGC GCGCCGGCTT CACCATCCCG CAGCTGTTCC TGGTGACGGG CATCCTCAAC
GCCGTGGTGG CGATCTACAT CTACACGCTG CTGCCGGAAT TCCTGATCCG CTTCGTGATG
TGGCTGCTGA TCCATACCGT CTACCGCGTC AAGGTGGAGG GCGACGAGCG GATTCCCGAC
GAGGGCCCGT GCCTGCTGGT CTGCAACCAT GTCAGCTTTG TCGACGCGGT GGTGGTGGGG
GCCTTCGTGC GCCGGCCGGT GCGCTTCGTG ATGGACCACC GCATCTTCCG CGTGCCGCTG
CTGTCCTGGT TCTTCCGCAC GATCAAGGCG ATCCCCATCG CGCCGGCGCA CGAAGACGAG
GCGCTGCTCA AGCGCGCCTA CGACGCCATC GCCGCCGCGC TGGCCGAGGG CGAGGTGGTC
TGCATCTTCC CCGAGGGCAA GATCACGGCC ACCGGCGAGA TGAATCCGTT CAAGGACGGC
GTGCGCCGCA TCGTCGAGCG CACCCCGGTG CAGGTGGTGC CGATGGCGCT GCGCGGCCTG
TGGGGCAGCT TCTTCTCGCG CAAGGATGGC GCGGCGATGA CGCGCCCGTT CCGCCGCGGC
TTCCTCAACC GGCTGGAGCT GTGCATCGGC ACGCCGGTGG CACCGCAGGC GGTGTCGCCG
GAAGGGCTGC AGGCCGCTGT GCTGGCCCTG CGCGGCGAGC GGCGCTAG
|
|---|
| Protein sequence | MSQSSQFSLL KQRRFAPFFW TQFLGAMNDN VFKVAFSSLV TYHAALFGNA DPASAAFLIS
AIFIAPFVLL SATSGQIADR MDKARLIRLV KTLEIAIMAI GCAGFALRRV ELLYLCTFLM
GVHSTLFGPV KYAYLPQHLQ PSELVGGNGL VEMGTFVAIL LGTIGGGELA NLTRNGELVG
PALTGIACLA IAVGGWLTAR GVPVSPASQP DLRINWNPVS ETWRNLKLAS NQRAVFLSLL
GISWLWFVGA TFLTSFFAFA RNVLGGDQNV VTLLLAVFSI GIGLGSVLCE KLSGRMVEVG
LVPFGSIGMT VFAVDLYFAS HAEALVAHDA LTGVAGFLQN HRHWRVLADL FLLAMFGGFY
SVPLYALIQS RCEPTHRARI IAANNILNAL FMIASAVLAM VLTRAGFTIP QLFLVTGILN
AVVAIYIYTL LPEFLIRFVM WLLIHTVYRV KVEGDERIPD EGPCLLVCNH VSFVDAVVVG
AFVRRPVRFV MDHRIFRVPL LSWFFRTIKA IPIAPAHEDE ALLKRAYDAI AAALAEGEVV
CIFPEGKITA TGEMNPFKDG VRRIVERTPV QVVPMALRGL WGSFFSRKDG AAMTRPFRRG
FLNRLELCIG TPVAPQAVSP EGLQAAVLAL RGERR
|
|---|
| |