| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1458 |
|---|
| Symbol | |
|---|
| ID | 1220287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 1558924 |
|---|
| End bp | 1560783 |
|---|
| Gene Length | 1860 bp |
|---|
| Protein Length | 619 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637237841 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_519579 |
|---|
| Protein GI | 17546177 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.412179 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTCAA GAATCGAAGA TTACGCGCTG ATCGGTGATT GCGAAACCGC CGCCCTGGTG
TCTCGCGACG GCTCGATCGA CTGGCTGTGC TGGCCCCGGT TCGATTCCGG CGCCTGTTTC
GCCGCGCTGC TCGGCACGCC CGACCACGGC CGCTGGCGCA TCGCCCCGCA AGGCCCCATC
CGCGCCGTCC GCCGCCGCTA CCTGCCCGGC ACGCTGATCC TGGAGACCGT GTTCGAGACC
GACACCGGCA CCGCCAGCCT GACCGATCTG ATGCCCTCCC GCCTGCCGGG CACCCCCAGC
GCGCGCGAAG ACACCTCCGA CCTGGTGCGC ATCGTGCGCG GGCTGTCAGG TACCGTCGCC
ATGCGCATGG ACCTCACGCT GCGCTTTGAC TACGGCGCCT CCGTCCCGTG GGTCAGCCGC
GTGACGGAAG AAACCGGCGC CGTGTCCGAC GACCCGTGCG AGATGCCCGG CTGCGTACTG
CGCGCCATCG CCGGCCCCGA CATGGTGGTG CTGCGCACGC CGGCGCAGGT GCGCGGCGAG
AACCTGTCCA CCGTCGCCGA GTTTGCCGTG GCAGCCGGCG AGGCGATGCC CTTCGTGCTG
ACGCATTCGC CATCGCACCG GCCGCTGCCC GCATCGATCG ATGCCATCGA AGCCCAGCGC
GACACGGAGC CCCGCTGGCG CGCCTGGTCC GGCCGCTGCC GGGGCGCCGG CGAATGGGCC
GAGGCCATCG AGCGCTCCCT CATCACGCTC AAGGCGCTGA CCTATCATCC GACCGGCGGC
CTGGTGGCCG CGCCCACCAC CTCCTTGCCC GAACAGCCCG GCGGCGTGCG CAACTGGGAC
TACCGCTACT GCTGGCTGCG CGATGCCACC CTGACCCTGC TCGCGCTGAT GAACGCGGGC
TACTACAGCG AAGCCCGCGC CTGGCGCGCA TGGCTGGAGC GCGCGGTGGC CGGCAGCCCG
GCGCAGATCC AGATCATGTA CGGCATCGCC GGCGAACGCC GCCTGGGCGA GTGGACCGTG
CCGTGGCTGC CCGGCTACGA AGGCGCGCAG CCGGTGCGCA TCGGCAACGC GGCGGCCGTG
CAACTGCAGC TGGACGTGTA CGGCGAGCTG ATGGACGCGC TCTACATCGC CCGCAAGGGC
GGCCTGGACG GCGACGCGGC CTCCTGGCGC CTGCAGGTCG CGCTGATGAC GCACCTCGAA
GCCGCCTGGC AGTCGCCCGA CGAGGGGATC TGGGAGGTGC GCGGCCCGGC GCGGCATTTC
ACGCATTCCA AGGTGATGGC GTGGGTCGCG TTCGACCGCG CGGTCAAGAC CATCGAACAG
TTCGGCCTGG ACGGCCCGCT GGCCCGCTGG CGGGCCGTGC GCGACCGCAT CCACGACGAG
GTCTGCCGCC ACGGCTACAG TGCCGAACGC GGCTGCTTCG TGCAGAGCTA CGGCAGCCGC
GAAATGGATG CCGCCCTGCT GATGCTGCCG CTGGTCGGTT TCCTGCCTGC ATCCGATCTG
CGCATCCAGC GCACCGTGCG CGCCATCGAA GACGACCTGC TGGCCGACGG CCTGGTGCGC
CGCTATCGCA CCGAAGCCGT GACGGATGGA CTGCCCGCCG GCGAAGGCGT GTTCCTCGCC
TGCAGCTTCT GGTACGTCGA CAACCTCGTG CTGCAGGGCC GCCACGACGA AGCCCGGGCG
CTGTTCGCCA AGCTGCTCGC GCTGCGCAAC GACGTGGGCC TGCTGGCCGA GGAATACGAT
CCCGGCTCGG GCCGCATGCT CGGCAACTTC CCGCAGGCGT TCTCGCATAT CGCGCTGGTG
AACTCGGCGC TGGCGCTGTG CGCGGCGGCC GATCACGTCG GCCAGCGCAC CGGCACCTGA
|
|---|
| Protein sequence | MPSRIEDYAL IGDCETAALV SRDGSIDWLC WPRFDSGACF AALLGTPDHG RWRIAPQGPI
RAVRRRYLPG TLILETVFET DTGTASLTDL MPSRLPGTPS AREDTSDLVR IVRGLSGTVA
MRMDLTLRFD YGASVPWVSR VTEETGAVSD DPCEMPGCVL RAIAGPDMVV LRTPAQVRGE
NLSTVAEFAV AAGEAMPFVL THSPSHRPLP ASIDAIEAQR DTEPRWRAWS GRCRGAGEWA
EAIERSLITL KALTYHPTGG LVAAPTTSLP EQPGGVRNWD YRYCWLRDAT LTLLALMNAG
YYSEARAWRA WLERAVAGSP AQIQIMYGIA GERRLGEWTV PWLPGYEGAQ PVRIGNAAAV
QLQLDVYGEL MDALYIARKG GLDGDAASWR LQVALMTHLE AAWQSPDEGI WEVRGPARHF
THSKVMAWVA FDRAVKTIEQ FGLDGPLARW RAVRDRIHDE VCRHGYSAER GCFVQSYGSR
EMDAALLMLP LVGFLPASDL RIQRTVRAIE DDLLADGLVR RYRTEAVTDG LPAGEGVFLA
CSFWYVDNLV LQGRHDEARA LFAKLLALRN DVGLLAEEYD PGSGRMLGNF PQAFSHIALV
NSALALCAAA DHVGQRTGT
|
|---|
| |