| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1394 |
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| Symbol | dapC |
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| ID | 1220218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 1485259 |
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| End bp | 1486512 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637237772 |
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| Product | succinyldiaminopimelate transaminase |
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| Protein accession | NP_519515 |
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| Protein GI | 17546113 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
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| TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGCTC AGCCCCCCGG CCCACTCCGA CCCATCCGGT CCATGCCCAA CACCGTGAAT
CCGCGCCTGT CCAGCCTCCA GCCGTATCCG TTCGAGAAAC TGAAAGCGCT CGTCAAGGAC
GTGACGCCCA GCCCCGCGCA TGCGCCGATC AGCTTCGGCA TCGGCGAGCC CAAGCATCCG
ACGCCGGCGC TGGTGAAAGA CGCGCTGACG GCCTCGCTGG CCGGACTGGC GAATTATCCC
ACGACGGCCG GCTCCGACGC GCTGCGCCAG TGCATCGCCG CCTGGCTGGA GCGCCGCTAC
GGCCTGCCCA AGGTCGATGC CGCCACCGAG GTACTGCCGG TCAACGGCTC GCGCGAAGCG
CTGTTCGCCT TTGCGCAGAC CGTGATCGAC GGCAGCAAGC CCGGCGCGCG CGTGCTGTGC
CCGAACCCGT TCTACCAGAT CTACGAAGGC TCGGCCCTGC TGGCCGGCGC GCAGCCGCTG
TTCGCCAACA GCAACCCGGC GCGCAACTAC GCGCCCGACT TCGACGCCAT CACGCCGGAA
GAATGGCGCA ACGTGCAGCT CGTCTTCGTG TGCAGCCCCG GCAACCCGAC CGGCGCCGTG
CTCACGCTGG AGGACTGGAA GCAGCTGTTC GCGCTGTCCG ACCGGTACGG CTTCGTCATC
GCGTCGGACG AGTGCTATTC CGAGATCTAC TTCGACGAGG CCAACCCGCC GCTGGGTGCG
CTGCAGGCCG CGCACCAGCT CGGCCGCGGC TTCGAGCGGC TGGTGATGTT CTCGAGCCTG
TCCAAGCGCT CCAACGTGCC GGGCATGCGC TCGGGCTTCG TGGCGGGTGA CGCCAAGCTG
ATCAAGGCCT ACCTGCTGTA TCGCACGTAT CACGGCAGCG CGATGAACCC GGCGGTGCAA
TCCGCCAGCA TCGCGGCCTG GAACGACGAG ACCCACGTGC GCGAGAACCG CGCGCAGTAC
GTCAGGAAGT TCCAGTCGGT CACGCCGATG CTGGCCGAGG TGCTGGACGT GGCCCTGCCC
GATGCGGCCT TCTATCTGTG GGCCAACGTC AAGCGCACCG GCCTGTCGGA CACCGCGTTC
GCGCGCGAGC TGCTGGCCGC CAAGAACGTC GCTGTGCTGC CGGGCAGCTA CCTCGCCCGC
GAGGCGCACG GCGTCAACCC GGGCCAGGAC TACGTCCGCA TCGCGCTGGT GGCCGGCGTG
GACGAGTGCC TGGACGGCGC GCGCCGCATC GTCGAGTTCT GCCAGCAACG CTGA
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| Protein sequence | MLAQPPGPLR PIRSMPNTVN PRLSSLQPYP FEKLKALVKD VTPSPAHAPI SFGIGEPKHP
TPALVKDALT ASLAGLANYP TTAGSDALRQ CIAAWLERRY GLPKVDAATE VLPVNGSREA
LFAFAQTVID GSKPGARVLC PNPFYQIYEG SALLAGAQPL FANSNPARNY APDFDAITPE
EWRNVQLVFV CSPGNPTGAV LTLEDWKQLF ALSDRYGFVI ASDECYSEIY FDEANPPLGA
LQAAHQLGRG FERLVMFSSL SKRSNVPGMR SGFVAGDAKL IKAYLLYRTY HGSAMNPAVQ
SASIAAWNDE THVRENRAQY VRKFQSVTPM LAEVLDVALP DAAFYLWANV KRTGLSDTAF
ARELLAAKNV AVLPGSYLAR EAHGVNPGQD YVRIALVAGV DECLDGARRI VEFCQQR
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