| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1390 |
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| Symbol | dapE |
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| ID | 1220214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 1482385 |
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| End bp | 1483545 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637237768 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | NP_519511 |
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| Protein GI | 17546109 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCGCCA TGTCGCCCAC GCTTGCCCTC ACTGAAGACC TGATCCGCCG CCGCTCCGTC
ACGCCCGAAG ACAAGGGCTG CCAGGATGTG CTGATCGAAC GCCTGTCCGC CGCCGGCTTC
CAATGCGAAA CCGTGGTCAG CGGGCCGGAC CACTTCCGCG TGACCAACCT GTGGGCCGTC
AAGCGCGGCC GCGCGGGTAC CGACGGCAAG CTGCTGGTCT TCGCCGGCCA CACCGACGTG
GTGCCGACCG GCCCCGTGGA GCAGTGGCGC TCCGACCCGT TCGAGCCGAC CCACCGCGAC
GGCAAGCTCT ATGGCCGCGG CGCCGCCGAC ATGAAAACCT CGATCGCCGG GTTCGTGGTA
GCCGCCGAGG AATTCGTCGC CGTGCATCCG GACCACGCCG GCTCGATCGG CTTCCTGATC
ACCAGTGACG AGGAAGGCCC GGCCCACGAC GGCACCATCA AGGTCTGCGA CCTGCTGCGC
ACGCGCGGCG AGCGGCTGGA CTACTGCGTG GTGGGCGAGC CGACCTCGGT GTCCACGCTC
GGCGACATGG TCAAGAACGG GCGACGCGGC TCGCTGTCGG GCAAGCTGAC CGTCAACGGC
GTGCAGGGCC ACATCGCCTA TCCGCACCTG GCCAAGAACC CGATCCACCT GGCCGTGCCG
GCGCTGACCG CGCTGGCGGC CGAGCAGTGG GACGACGGCA ACGCCTACTT CCCGCCGACC
ACCTGGCAGA TGTCGAACAT CCACGGCGGC ACCGGCGCGA CCAACGTGAT TCCGGGCCAC
GTCATCATCG ACTTCAACTT CCGCTTCTCG ACGGCGAGCA CGCCGGAGGG CCTGAAGTCG
CGCGTGCACG CCATCCTCGA CGCGCACGGC CTGGACTACA CGCTGGCCTG GACGCTGGGC
GGCGAGCCCT TCCTGACCGA GCGCGGCGAG CTGTCGGAGG CGCTGTCGTC GGCCATCGGG
GCCGAGTGCG GCGTCGCCAC TGAACTGTCG ACCACCGGCG GCACGTCGGA CGGCCGCTTC
ATCGCCAAGC TGTGCCCGCA GGTGATCGAG TTCGGGCCGC CCAACGCCAG CATCCACAAG
ATCGACGAGC ACGTCGATGT GGCCTTCATC GAGCCGCTCA AGAACGTGTA CCGGCGCGTG
CTGGAAACAC TGATCGCCTG A
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| Protein sequence | MTAMSPTLAL TEDLIRRRSV TPEDKGCQDV LIERLSAAGF QCETVVSGPD HFRVTNLWAV
KRGRAGTDGK LLVFAGHTDV VPTGPVEQWR SDPFEPTHRD GKLYGRGAAD MKTSIAGFVV
AAEEFVAVHP DHAGSIGFLI TSDEEGPAHD GTIKVCDLLR TRGERLDYCV VGEPTSVSTL
GDMVKNGRRG SLSGKLTVNG VQGHIAYPHL AKNPIHLAVP ALTALAAEQW DDGNAYFPPT
TWQMSNIHGG TGATNVIPGH VIIDFNFRFS TASTPEGLKS RVHAILDAHG LDYTLAWTLG
GEPFLTERGE LSEALSSAIG AECGVATELS TTGGTSDGRF IAKLCPQVIE FGPPNASIHK
IDEHVDVAFI EPLKNVYRRV LETLIA
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