| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1288 |
|---|
| Symbol | nusA |
|---|
| ID | 1220111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1370352 |
|---|
| End bp | 1371827 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637237665 |
|---|
| Product | transcription elongation factor NusA |
|---|
| Protein accession | NP_519409 |
|---|
| Protein GI | 17546007 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0215031 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCG AAGTTCTGTT GCTCGTCGAT GCGCTTGCGC GTGAAAAGAA CGTCGACAAA
GATGTAGTGT TCGGGGCGCT GGAGGCCGCG TTGGCTTCGG CGACCAAGAA GCGCTTTGAA
GAGGACGTGG AGGTGCGCGT GGCGATCGAC CGCGAGTCGG GCGAACACGA AACCTTCCGC
CGCTGGCTGG TCGTTCCCGA CGATGCCGGT CTGCAGGAGC CGGACAAGCA GATTCTCCTG
TTCGAGGCCC GCGAGCAGAA TCCCAGCATC AATCTCGACG AGTTCATCGA AGAGCAGATC
GAGTCGGTCG AATTCGGCCG GATCGGTGCG CAGGCGGCCA AGCAGGTGAT CCTGCAGCGC
ATCCGTGATG CCGAGCGCGA GCAGATCCTG AACGATTATC TCGAGCGCGG CGAAAAGATC
ATGACCGGCA CGATCAAGCG TGCCGACAAG AAGGGCCTGA TCGTCGAATC CGGCCGTGTC
GAGGCGCTGC TTGCGCGCGA CCAGATGATT CCGAAGGAGA ACCTGCGCAC GGGCGACCGC
GTGCGTGCGT ACATCCTGAA CGTCGACCGC ACCGCACGTG GCCCGCAGAT CGAGCTGTCG
CGCACCTGCC CCGAGTTCCT GATCAAGCTC TTCGAGAACG AAGTGCCCGA AATGGAGCAG
GGTCTGCTGG AGATCAAGGC AGCCGCGCGC GATCCGGGCG TGCGTGCGAA AATCGCGGTG
GTGGCGCACG ACAAGCGCAT CGACCCGATC GGTACTTGCG TCGGCGTGCG TGGCACGCGC
GTGACCGCGG TGCGCAACGA AGTCGGCGGC GAGGCGGTGG ACATCGTGCT GTGGTCGGAA
GACCCGGCGC AGTTCGTGAT CGGCGCGCTG GCGCCGGCAC AGGTGCAGTC CATCGTCGTG
GATGAAGAAA AGCACAGCAT GGATGTGGTG GTCGACGAGG AGAACCTCGC CGTCGCCATC
GGTCGCAGCG GGCAGAACGT GCGCCTGGCG TCCGAGCTGA CCAGCTGGCA GATCAACATC
ATGACGCCGG CAGAATCCGC GCAGAAGCAG GCGGAGGAAA GCTCCACGGT GCGCAAGCTG
TTTATGGAAA AGCTGGACGT GGACGAGGAA GTCGCCGACA TCCTGATCGA AGAGGGTTTC
ACCTCGCTCG AGGAAGTGGC CTACGTGCCG CTGCAGGAAA TGCTGGAGAT CGAGGCGTTC
GACGAAGACA CCGTCAACGA ACTGCGCAAC CGCGCCCGCG ACGTGCTGTT GACGATGGAG
CTGGCAAAGG AAGAGAAGGT CGAGAAGGTG TCGCAAGACC TGCGCGACCT CGAGGGGCTG
ACCCCGGAGC TGATCGGCAA GCTGGCCGAG GGGAACATCC AGACGCGTGA CGACTTGGCC
GAGCTGGCCG TGGACGAACT GGTCGACATG ACCGGCGTCG ACGAAGAACA GGCCAAGGCG
CTGATCATGA AGGCGCGTGA ACACTGGTTT TCGTGA
|
|---|
| Protein sequence | MSREVLLLVD ALAREKNVDK DVVFGALEAA LASATKKRFE EDVEVRVAID RESGEHETFR
RWLVVPDDAG LQEPDKQILL FEAREQNPSI NLDEFIEEQI ESVEFGRIGA QAAKQVILQR
IRDAEREQIL NDYLERGEKI MTGTIKRADK KGLIVESGRV EALLARDQMI PKENLRTGDR
VRAYILNVDR TARGPQIELS RTCPEFLIKL FENEVPEMEQ GLLEIKAAAR DPGVRAKIAV
VAHDKRIDPI GTCVGVRGTR VTAVRNEVGG EAVDIVLWSE DPAQFVIGAL APAQVQSIVV
DEEKHSMDVV VDEENLAVAI GRSGQNVRLA SELTSWQINI MTPAESAQKQ AEESSTVRKL
FMEKLDVDEE VADILIEEGF TSLEEVAYVP LQEMLEIEAF DEDTVNELRN RARDVLLTME
LAKEEKVEKV SQDLRDLEGL TPELIGKLAE GNIQTRDDLA ELAVDELVDM TGVDEEQAKA
LIMKAREHWF S
|
|---|
| |