| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1276 |
|---|
| Symbol | |
|---|
| ID | 1220099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1359455 |
|---|
| End bp | 1360912 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637237653 |
|---|
| Product | cbb3-type cytochrome c oxidase subunit I |
|---|
| Protein accession | NP_519397 |
|---|
| Protein GI | 17545995 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
|---|
| TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.901841 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCAT CCAGCGCGTT ACAGCACGCC CAGACGTTCA ATTACCGCGT TGTCCGCCAG
TTCTCGATCA TGACGATCGT CTGGGGCATC GTCGGCATGG CGGTCGGCGT GCTGATCGCG
GCACAGTTGA TCTGGCCGCA ACTGAATTTT GGGGTGCCCT GGCTGACATA TGGGCGACTG
CGTCCGCTGC ATACCAATGC CGTCATCTTC GCCTTCGGCG GCAGCGCGCT GTTTGCCACG
TCGTATTACG TCGTCCAGCG CACCTGCCAG GCGCGGTTGG TTTCCGACGC GCTCGCGGCC
TTCACGTTCT GGGGCTGGCA GGCCGTCATC GTGGCGGCGG CCATCACGCT GCCGCTGGGC
TACACCAGTT CGAAGGAGTA CGCAGAGCTG GAGTGGCCGA TCGACATCCT GATCACCGTG
GTGTGGGTGG TGTACGCCAT CGTCTTCTTC GGCACCATCC TCAAGCGCAA GACCCGGCAC
ATCTACGTCG CCAACTGGTT CTTCGGCGCC TACATCCTCA CCATCGCGCT GCTGCATATC
GTCAATAACG CCGAGCTGCC GGTGTCGATG TGGAAGTCGT ACTCGGCCTA CGCCGGCGTG
CAGGACGCGA TGGTGCAGTG GTGGTACGGC CATAACGCGG TGGGCTTCTT CCTGACCACC
AGCTTCCTCG GCATGATGTA CTACTTCGTG CCCAAGCAGG CCGAGCGCCC GATCTATTCG
TACCGCCTGT CGATCGTCCA CTTCTGGGCA CTGAACTTTA CCTACATGTG GGCGGGCCCG
CACCACCTGC AATACACCGC GCTGCCGGAC TGGGCTCAGT CGCTGGGCAT GGTGTTTTCG
CTGATCCTGC TCGCGCCGTC GTGGGGCGGC ATGATCAACG GGATCATGAC GATGTCCGGC
GCCTGGCACA AGCTGCGCAC CGACCCGATC CTCAAGTTCC TAGTGGTGGC GCTGTCGTTC
TACGGCATGG CGACCTTCGA GGGCTCGATG ATGTCGATCA AGACCGTCAA CGGGCTGTCG
CACTACACCG ACTGGACCAT CGGCCACGTG CATTCCGGCG CGCTGGGCTG GGTGGCGATG
ATCACCATCG GCTCGATGTA CTACATGATC CCGCGCCTGT TCGGGCGGCA GAAGATGTAT
AGCACGCGGC TGATCGAGGT GCACTTCTGG GTGGCCACCA TCGGCGTGGT GCTCTATATC
GCGGCCATGT GGGTCGCCGG TGTGATGCAG GGCCTGATGT GGCGCGCCAC CGAGCCCGAC
GGCACGCTGA CCTACAGCTT TGTCGAGGCG GTGAAGGCAA CGTATCCGTT CTACGCGATC
CGTCTGCTGG GTGGCCTGTG CTTCCTCGGA GGCATGCTGC TGATGGCCTT CAACGTGCTC
AAGACCCTCC AGGGCAGCCG GGCCGTGGAT GCGCCGATTC CTCAAGCCGC GCAGATGCCC
CTGCCGGCGG CACAGTGA
|
|---|
| Protein sequence | MDASSALQHA QTFNYRVVRQ FSIMTIVWGI VGMAVGVLIA AQLIWPQLNF GVPWLTYGRL
RPLHTNAVIF AFGGSALFAT SYYVVQRTCQ ARLVSDALAA FTFWGWQAVI VAAAITLPLG
YTSSKEYAEL EWPIDILITV VWVVYAIVFF GTILKRKTRH IYVANWFFGA YILTIALLHI
VNNAELPVSM WKSYSAYAGV QDAMVQWWYG HNAVGFFLTT SFLGMMYYFV PKQAERPIYS
YRLSIVHFWA LNFTYMWAGP HHLQYTALPD WAQSLGMVFS LILLAPSWGG MINGIMTMSG
AWHKLRTDPI LKFLVVALSF YGMATFEGSM MSIKTVNGLS HYTDWTIGHV HSGALGWVAM
ITIGSMYYMI PRLFGRQKMY STRLIEVHFW VATIGVVLYI AAMWVAGVMQ GLMWRATEPD
GTLTYSFVEA VKATYPFYAI RLLGGLCFLG GMLLMAFNVL KTLQGSRAVD APIPQAAQMP
LPAAQ
|
|---|
| |