Gene RSc1242 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1242 
Symbol 
ID1220065 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1316844 
End bp1318400 
Gene Length1557 bp 
Protein Length518 aa 
Translation table11 
GC content66% 
IMG OID637237619 
Productsugar ATP-binding ABC transporter protein 
Protein accessionNP_519363 
Protein GI17545961 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1129] ABC-type sugar transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCATAG CCGTGTTGGA TCGGCCGATG TCCCGCCAGG ACACGCCGTC TGCTTCGTCA 
GTCCCGTCCG CCTGCGACTG CATGCTGGAA GTTCGTGGCG TCGGCAAATC CTTTCCCGGC
GTGGTCGCGC TCGACGACGT GCGGCTGCGC GTGCGGCGCG GCACCGTTCA TGCGCTGATG
GGCGAGAACG GTGCCGGCAA GTCCACGCTG ATGAAGATCA TTGCCGGCGT GCATGCGCCG
GACAGGGGCG AGATCCGCCT CAAGGGCGAG CCGGTCGTGC TGCACGGCCC GCTCGACGCG
CTCAATCGCG GCATTGCGAT GATCCATCAG GAACTGAACC TGATGCCGTA CATGACCGTG
GCCGAGAACA TCTGGATTCG GCGCGAGCCC AGGAACCGCT GCGGCCTGGT CGATCACGCC
GAACTGCGCC GGCGCACGCA GGCGCTGTTC GCGCGGCTGG CGATCGACAT CGACCCGGAG
GCCGAAGTGC GCACGCTGAC GGTGGCAAGC CGCCAGATGG TCGAGATCGC GAAGGCCGTG
TCGTTCGACT CCGAGGTGCT CATCATGGAT GAGCCGACGT CGGCGCTGAG CGATGTCGAA
GTCCACCATC TGTTCCGCAT CATTCGCCAG CTGCGCGAGC AGGGCAAGGG CATCGTCTAC
ATCACGCACA AAATGGACGA GCTGTTCGAG ATCGCCGACG AGTTCTCGGT GTTCCGCGAC
GGCAAGTCCA TCGGCACGCA TGCGGCGAGC GACGTCACGC GCGACGACAT CATCCGCATG
ATGGTCGGGC GCGAGATCAC GCAGATGTTT CCCAAGGCGG ATGTGCCGAT CGGCGACGTC
GTGCTGTCGG TGAAGAACCT GTGCCTCCAC GGCGTGTTCC GCGACGTGAG CTTCGATTTG
CGCGCGGGCG AGATTCTTGG CGTCGCGGGC CTGGTCGGCT CGGGGCGCTC GAACGTGGCG
GAGGCGCTGT TCGGCGTCGT GCCGGCCAGC AGCGGCGAGA TCCGGCTCGA CGGCGAGCGG
GTCAGCATCC GCACGCCCGC GCAGGCGATG CGGTACGGCA TGGCCTTCCT GACCGAAGAC
CGCAAGGACA CGGGCTGCTT CCTGAACCTC GACCTGCTCG CCAACATGGA AGCCGCGGTG
CTGCAGCGCC ACTACATGAC ATGCGGCTTC GTGCGGCGTG GCGCGCTGAA GCAGGATTGC
GAGGCCATGA GCCGCACGCT GCGGGTGAAG TCGCCGGGGC TGCACGAAGA AATCCAGAAC
CTGTCGGGGG GCAACCAGCA GAAGGTGCTG ATCGGCCGCT GGCTGCTGAC CCACCCGCGG
ATCCTGATCC TGGACGAGCC GACGCGCGGC ATCGATGTCG GCGCGAAAGC CGAGATCCAC
CGTCTCGTGA GCGCGCTGGC GGGCGAGGGC GTGGCGGTGC TGATGATCTC GTCGGAGATG
CCGGAAGTGC TGGGCATGAG CGACCGGATC ATGGTCATGC ACGAAGGCCG CGTGACCGGC
ATCGTCGATC GCAAGGACGC GAGCCAGGTC CGGGTCATGG AACTGGCTTC CCGCTGA
 
Protein sequence
MSIAVLDRPM SRQDTPSASS VPSACDCMLE VRGVGKSFPG VVALDDVRLR VRRGTVHALM 
GENGAGKSTL MKIIAGVHAP DRGEIRLKGE PVVLHGPLDA LNRGIAMIHQ ELNLMPYMTV
AENIWIRREP RNRCGLVDHA ELRRRTQALF ARLAIDIDPE AEVRTLTVAS RQMVEIAKAV
SFDSEVLIMD EPTSALSDVE VHHLFRIIRQ LREQGKGIVY ITHKMDELFE IADEFSVFRD
GKSIGTHAAS DVTRDDIIRM MVGREITQMF PKADVPIGDV VLSVKNLCLH GVFRDVSFDL
RAGEILGVAG LVGSGRSNVA EALFGVVPAS SGEIRLDGER VSIRTPAQAM RYGMAFLTED
RKDTGCFLNL DLLANMEAAV LQRHYMTCGF VRRGALKQDC EAMSRTLRVK SPGLHEEIQN
LSGGNQQKVL IGRWLLTHPR ILILDEPTRG IDVGAKAEIH RLVSALAGEG VAVLMISSEM
PEVLGMSDRI MVMHEGRVTG IVDRKDASQV RVMELASR