| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1229 |
|---|
| Symbol | |
|---|
| ID | 1220052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1300833 |
|---|
| End bp | 1301582 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637237606 |
|---|
| Product | putative tRNA/rRNA methyltransferase protein |
|---|
| Protein accession | NP_519350 |
|---|
| Protein GI | 17545948 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | [TIGR00186] rRNA methylase, putative, group 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00902362 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAGT CCAAGCTCCT GATCGGCTTT CACGCCGTTA CCGCCCGGCT GCGCCACGAT
GCGCGGTCGA TCGATGAAAT CTACTTCGAG GCCAACCGCC GTGACCGCCG CATGCAGGAT
TTCCTGAAAG CGGCGGAAGC CGCGGGCGTG CGCATGATTC CGGCCGACAA CGAACGGCTG
CGCGGCATTG CCGGCACCGA CCGCCACCAG GGCGTGGTGG CCAAGGCCGA GGCGCTGTCG
CTGGCGCTCA ACCTCGACGA GCTGCTCGAC GGCATCGAAG GTCCGCCGCT GCTGCTGGTG
CTCGACGGCG TGACCGACCC GCACAACCTC GGCGCTTGCC TGCGCGTGGC CGATGCGGCC
GGCGCGCACG CGGTGATCGC GCCGAAGGAC CGCAGCGTCG GCATCAATAC CACTGTCGCC
AAGGTGGCGA GCGGTGCGGC CGAGACCGTT CCCTACATCA CCGTGACCAA CCTGGCGCGC
ACGCTGCGCG AGCTGCAGCA GCGCGGTGTC TGGGTGATCG GCACGGCTGA CGAGGCAGAG
CAGGATCTCT ATCGGGCTGA CTTCAAGGGC CCCATCGCGC TGGTGATGGG CGCGGAAGGG
GAAGGCATGC GCCGCCTCAC GCGCGAGACC TGCGACACGC TGGTCAGCAT CCCGATGGCG
GGCAGTGTGG AGAGCCTGAA CGTCTCGGTG GCCAGCGGTG TGTGCCTGTT CGAGGCGGTG
CGCCAGCGCA GCGTCGTGCC TGCCAAGTGA
|
|---|
| Protein sequence | MSKSKLLIGF HAVTARLRHD ARSIDEIYFE ANRRDRRMQD FLKAAEAAGV RMIPADNERL
RGIAGTDRHQ GVVAKAEALS LALNLDELLD GIEGPPLLLV LDGVTDPHNL GACLRVADAA
GAHAVIAPKD RSVGINTTVA KVASGAAETV PYITVTNLAR TLRELQQRGV WVIGTADEAE
QDLYRADFKG PIALVMGAEG EGMRRLTRET CDTLVSIPMA GSVESLNVSV ASGVCLFEAV
RQRSVVPAK
|
|---|
| |