| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1228 |
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| Symbol | rnr |
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| ID | 1220051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1298192 |
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| End bp | 1300807 |
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| Gene Length | 2616 bp |
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| Protein Length | 871 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637237605 |
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| Product | exoribonuclease RNase R |
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| Protein accession | NP_519349 |
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| Protein GI | 17545947 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00057752 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCAACAC TCCAGAAGAA CAAATTGAAT CAACCGACTT ATCCGATCCC GAGCCGCGAG
GAAATCCTCG GTGTGCTGCG CACGTCGGGA TCTCCGCTGT CTGCCGCCGA CATCGCAAAG
GCGCTGTCTG TCACGCGCAA GGAGCATGAT GGCTTCATCA AGCGGCTGAC CGCGATGGAG
CGGGACGGCC AGCTCGAACT CAACCGCAAG GGGCGCTACG AACTGGCGCA CCAGCCCAAC
TTCATCGAAG GCCGCGTGGT CGGCCACCGG GACGGCTACG GCTTCTTCAT CCGCGACGAC
GGCGAGCCCG ACATCTTCCT GCCCGAGCGC GAAATGCAGA AGGCCATGCA TGGCGACCGC
GCACTGGTGC GCGTGATCGG CTATGACCGC CGCGGGCGTT CGGAAGGGCA GATCGTCGAG
ATGCTGGAGC GGGCCAACCG CTATGTGATC GGCCGGCTGC TGTCGGAGAG CGGCACGCTG
GTGGTGGCGC CCGAGGACAA GCGCCTGGGC CGCGACATCC TGATCGCGCC CAAGGGGCAG
GGCAAGGCCA AGGTCGGCCA GGTGGTGAGC GTGGAGATCC TGGAATATCC GGACCGCTAC
GTGCAGCCGA TCGGTCGCGT GGTCGAGGTG TTGGGCGAAA TCGACGACCC CGGCATGGAG
ATCGAGATCG CGGTGCGCAA GTATGGCGTG CCGCACGAGT TCTCCGAGGC CACGCTGCGC
GAGTCGGAGG CGCTGCCCGA TGTGGTGCGC GAATCCGATC TGGCCGGCCG GATCGATCTG
CGCGACGTGC CGCTGGTCAC CATCGACGGC GAGGACGCGC GCGACTTCGA CGACGCGGTC
TATTGCGAGC CGGTCAAGAT CGGCCGCAGC AAGGGTTGGC GCCTGGTCGT GGCGATCGCC
GACGTGTCGC ACTACGTGCA GCCGGGCAAG TCGCTCGACG TGGACGCGAT CGACCGCGCC
ACGTCGGTCT ATTTCCCGCG GCGCGTGATC CCGATGCTGC CGGAGAAGCT GTCCAACGGC
CTGTGCTCGC TGAATCCGGA GGTGGATCGC CTGTGCATGG TGTGCGATGC GGTGATCACG
GCCAAGGGGC AGATCAAGGC GTATCAGTTC TACCCGGCCG TGATGCACTC GGCCGCGCGC
CTGACCTACA ACGAGGTCTG GTCGATCCTG TCCAACGTGA AGGGGCCGGA GGCGGCCAAG
CGCGCGCCGC TGGTGCCGCA TCTGCAGGAT CTGTACGAAC TGTTCCAGGT CTTGCTGAAA
GCCCGCCGCG AACGGGGCGC CATCGACTTC GACACCACCG AGACCTATAT CGTCTGCAAT
GCGCAGGGCA AGATCGAACA GATCCTGCCG CGCACCCGCA ACGACGCGCA CCGGCTGATC
GAGGAGTGCA TGCTGACCGC CAACGTCTGC GCGGCGGAGA TGCTGGAGCG CTACAAGCAT
CCGGCGCTGT ATCGCGTGCA TGCCGGTCCG ACCGAAGAGA AGCTGCAGGC GCTGCGCGCC
TTCCTCAAGA CCAGCGGCCT GACGCTGGGC GGCGGCGATA AGCCCCAGGC GGCGGACTAT
GCCGAGCTGA TGGAAAAGAT CATCGCGCGC CCTGACGCGC CGATGTTGCA GACCATGCTG
CTGCGCTCGA TGCAGCAGGC GGTCTACAGC CCCGACAACG TCGGCCACTT CGGCCTGGCG
TACGAGGCCT ACGCGCACTT CACCAGCCCG ATCCGCCGCT ATCCGGACCT GCTGGTGCAC
CGGGCCATCA AGGCCGTCCT GCAGCATTCG CGCTATGTGC CGGCGCTGGC GTCGGGCGTG
CAGCTCAACA GCGGGCTTTC GCCCAAGGCG CGCCGCATGC AGGCCGAGGC CGACAAGGCC
ACGCCGGCCG CCGTCGCCAG CAAGGCCAAG GTCGAGGCGA TCTGGCACGA GCTGGGCGTG
CATTGCTCGG CCAACGAGCG CCGCGCCGAC GAGGCTTCGC GCGACGTGGA GGCCTGGCTC
AAGTGCTACT TCATGCGCGA TAAGCTGGGC AATGAGTTCT CCGGCACGGT CAGCGCGGTC
ACCTCGTTCG GCATCTTCGT GCAGCTCGAC GAGCTGTACG TGGAGGGCCT GGTGCACGTG
ACCGAGCTGG GCAGTGACTA CTTCCAGTTC GACGAGGCCC GCAATGAGCT GCGCGGCGAG
CGTACCGGCA TCCGCTATCG CCTGACCGAT CGCGTGCGCG TGCAGTTGCT GCGCGTCGAT
CTGGATGCGC GCAAGATGGA TTTCCGGCTG ATCCAGGAGC CGTCGGTCAA GGCGTTGCGT
CCGGCCAAGG TGGCCGGCGT GCCGGCGGAG GGCGCGCCGC GCCAGCCGGC CGTCGCCACG
CCCGCGCCGC CGGTGGGGCG CAAGAAGCCG CGCCAGCTGG CAGCCTTGCT GGGCGGTACG
GCCAAGCCGG AGGAGTCGTT CGACGAGACG CTGGACCGCG TGTTCGAGGA GCAGCCGGTG
TTCGAGCCGG GGCCGCGCGC GCTGCCGCCG GGCCATGCGC ATGCCAAGCC GACGCGCAAG
AAGCCGGCCG CGCGCACGAC CAAGCCCAAG ACCGGCGGCA AGACCGCGAC GCGCAAGGCG
CCGGGCAAGA CCGTGCGGTC GCGCAAGGGG CGGTGA
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| Protein sequence | MSTLQKNKLN QPTYPIPSRE EILGVLRTSG SPLSAADIAK ALSVTRKEHD GFIKRLTAME
RDGQLELNRK GRYELAHQPN FIEGRVVGHR DGYGFFIRDD GEPDIFLPER EMQKAMHGDR
ALVRVIGYDR RGRSEGQIVE MLERANRYVI GRLLSESGTL VVAPEDKRLG RDILIAPKGQ
GKAKVGQVVS VEILEYPDRY VQPIGRVVEV LGEIDDPGME IEIAVRKYGV PHEFSEATLR
ESEALPDVVR ESDLAGRIDL RDVPLVTIDG EDARDFDDAV YCEPVKIGRS KGWRLVVAIA
DVSHYVQPGK SLDVDAIDRA TSVYFPRRVI PMLPEKLSNG LCSLNPEVDR LCMVCDAVIT
AKGQIKAYQF YPAVMHSAAR LTYNEVWSIL SNVKGPEAAK RAPLVPHLQD LYELFQVLLK
ARRERGAIDF DTTETYIVCN AQGKIEQILP RTRNDAHRLI EECMLTANVC AAEMLERYKH
PALYRVHAGP TEEKLQALRA FLKTSGLTLG GGDKPQAADY AELMEKIIAR PDAPMLQTML
LRSMQQAVYS PDNVGHFGLA YEAYAHFTSP IRRYPDLLVH RAIKAVLQHS RYVPALASGV
QLNSGLSPKA RRMQAEADKA TPAAVASKAK VEAIWHELGV HCSANERRAD EASRDVEAWL
KCYFMRDKLG NEFSGTVSAV TSFGIFVQLD ELYVEGLVHV TELGSDYFQF DEARNELRGE
RTGIRYRLTD RVRVQLLRVD LDARKMDFRL IQEPSVKALR PAKVAGVPAE GAPRQPAVAT
PAPPVGRKKP RQLAALLGGT AKPEESFDET LDRVFEEQPV FEPGPRALPP GHAHAKPTRK
KPAARTTKPK TGGKTATRKA PGKTVRSRKG R
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