| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1220 |
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| Symbol | hfq |
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| ID | 1220042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1290132 |
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| End bp | 1290371 |
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| Gene Length | 240 bp |
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| Protein Length | 79 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637237596 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | NP_519341 |
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| Protein GI | 17545939 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00041911 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCAACA AAGGGCAATT GCTACAAGAC CCGTTTCTGA ATGCGCTGCG TAAGGAGCAT
GTGCCGGTGT CGATCTATCT CGTCAACGGT ATCAAGCTGC AAGGCAATAT CGAATCGTTC
GACCAATATG TCGTTCTGCT GCGCAATACC GTCACGCAGA TGGTGTACAA GCATGCGATT
TCCACTGTGG TGCCGGCGCG TGCCGTGAAT TTCCGCGTGG ATGAGGCCTC CGACGCCTGA
|
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| Protein sequence | MSNKGQLLQD PFLNALRKEH VPVSIYLVNG IKLQGNIESF DQYVVLLRNT VTQMVYKHAI
STVVPARAVN FRVDEASDA
|
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