Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1181 |
Symbol | |
ID | 1220003 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 1243885 |
End bp | 1245681 |
Gene Length | 1797 bp |
Protein Length | 598 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637237557 |
Product | inner membrane transmembrane protein |
Protein accession | NP_519302 |
Protein GI | 17545900 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000439298 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.187558 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCCCA CCCGCGTCTC GCGCGTTCGC CTGACCGCCT CCGCCACCAG CGCCCTGCCG CGCTGGCTGC TGCTCGCCAT CTGCGTGATC TACGGCCTGT CCGGCCTGTT CTACCGCGAT CCATGGAAGA ACGAAGACGC CGCCGGCTTC GGTGTGATGT GGTCACTGGC GACCGGCAAT GGCCAGGATT GGCTGATGCC CAACATCGTG GGCCGCCCGT TCGTGCAGGC CGGGCCGCTC GTGTTCTGGA TCGGCGGCGC GTTCATCCGC GTGTTCGGCC AGTGGATGGG CCCGTCGGAC GCCTCGCGCC TGACCACGGC ACTGTTCTTC TTCATCACCT GCGCATGCAT CTGGTACGGC GCCTACCTGC TTGGCCGCCG CGCCGAGGTC CAGCCCTTTG AATTCGTCTT CGGCGGCCAG CCGAGCCCCA TCGACTACGG CCGCACGCTG GCCGACGGCG CGCTGCTGAT CTTCCTCGCC TGCGTGGGGC TGGCCCAGCG CGGTCACGAA ACCACGCCGC TGGTCGGCGC GCTGTGTTTC GTGGCGCTCA CGCTGTACGG TCTGATCCGG GCGCTCGACC GGCCGGTGCT GGGCAGCCTG ATCTATGGCT TCGGCATCGG CTGCCTGTCG CTGGCGGGCG GGCCGATCCT GCCCCTGGTC ATCACGCTGT CCGTGCTGGT GACGGCGCGC CTGACCCGCG TGCTGCCGAT CAGGCCGCTG CTGACGATTG CCCTGCCGGT ATCGCTGGTG CTGGGCTGGT CGTGGCCGGC GATGGCCTAC CTGCTGGCCG CCAACCCGAC CGACGCCGTC ACCTTCATCC GCGAGTGGGC ACGCTTCGAC CGCCGCCAGT ACACCGGGCC GACCCCGCAT TCGCTGGGCT ACATCGCGCG CAACCTGCTG CCCTTCGCGT GGCCCGTGTG GCCACTGGCA GCATGGGCCT GGAAAAGCTG GAGCGGCATG CGCACCGCCC CGCATATTGC GCTGCCGCTG GCGATCCTGG TGCCGCAGTC CGTGCTGCTG CTCCTGCAAC CCCAGCCGGG CGACGACGGC TTCTTGCTGC TGATTCCGCC GATGGCCGTG ATGGCGACGT TCGCCCTGCC CACGCTCAAG CGCGCGGCCA TCAACGCCAT CGACTGGTTC GCGCTGCTGG CCTTCACCCT GCTCGGCGGC TTCGTCTGGC TGGTCTGGAT CGCCAAGATG ACCGGCTATC CGGCGCAGAT CGCGCGCAAC CTGTACCGCC TGCTGCCAGG CTATCGACCG ACGTTCAGCT GGACAGCGCT GCTGTGCGCG CTGCTCGTGA CGGCGGCCTG GGTCCTGATC GTGGTGTGGC GAACCTCGCG CGTGCCCAAG GCGATCTGGC GCGCGGTGGT GATCTCCGCG GCCGGCACCA CGCTGCTGTG GGTGCTGATG ATGACGCTGT GGCTGCCCAC CATCAACTAC GCCAAGACGT ACCGCGAGGT CGCGCAGTCG GCCTCGCTGG CGCTGCCGCA GACGTATACA TGCGTGCAGC CGATCCGCAT CGGCGACGCC CAGCTGGCAT CGTTCGCGTA CTTCGGTCAC ATCCGCTTCG GCAATCCCGA AGACAACTGC GACATCCTGC TGCGCCATGA CCCGTACGAA TACGGCGATC CATCCAGCAT GCCCAACTAC GAATGGCGCG TCATCTGGGA AGGCCGCCGC CCCGCCGACC GCGACGAGCA CTTCCGCATG TACCGCCTGA CCGAAGCCGC CAAGGCCACC CACCCGGCGC CCGTTCCGGC CACCTCGCGC AGGCGCAAGC TGCATGTTCC TGGCTGA
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Protein sequence | MNPTRVSRVR LTASATSALP RWLLLAICVI YGLSGLFYRD PWKNEDAAGF GVMWSLATGN GQDWLMPNIV GRPFVQAGPL VFWIGGAFIR VFGQWMGPSD ASRLTTALFF FITCACIWYG AYLLGRRAEV QPFEFVFGGQ PSPIDYGRTL ADGALLIFLA CVGLAQRGHE TTPLVGALCF VALTLYGLIR ALDRPVLGSL IYGFGIGCLS LAGGPILPLV ITLSVLVTAR LTRVLPIRPL LTIALPVSLV LGWSWPAMAY LLAANPTDAV TFIREWARFD RRQYTGPTPH SLGYIARNLL PFAWPVWPLA AWAWKSWSGM RTAPHIALPL AILVPQSVLL LLQPQPGDDG FLLLIPPMAV MATFALPTLK RAAINAIDWF ALLAFTLLGG FVWLVWIAKM TGYPAQIARN LYRLLPGYRP TFSWTALLCA LLVTAAWVLI VVWRTSRVPK AIWRAVVISA AGTTLLWVLM MTLWLPTINY AKTYREVAQS ASLALPQTYT CVQPIRIGDA QLASFAYFGH IRFGNPEDNC DILLRHDPYE YGDPSSMPNY EWRVIWEGRR PADRDEHFRM YRLTEAAKAT HPAPVPATSR RRKLHVPG
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