Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1173 |
Symbol | |
ID | 1219989 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1232165 |
End bp | 1234042 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637237543 |
Product | substrate-binding periplasmic (PBP) ABC transporter protein |
Protein accession | NP_519294 |
Protein GI | 17545892 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000592479 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.415148 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGTGC TCGGAGCGGC GCTGAAGCGA CTAGCAATGA TGACCTGGGG CCTCGCCGCC AGCCTGAGCG CGGCCTCCGC GTGGGCCGCG CACGGCTATG CCGAATACGG CGACCTGAAG TACCCGGCGG GCTTCACGCA TTTCGCCTAT CTGAACCCGA AGGCGCCGAT CGGCGGCACG CTCGCGCTCG GCAACCCGGA CCGCCGCACC AGCTTCGACA AGTTCAATCC GTACACGATC AAGGGCACGG CCGCGCCGGG GCTCAACGCG CTGGTCTTCG AGAGCCTGCT GATCGGCAGC TGGGACGAGA CCGCCAGTGG CTACGGCCTG CTCGCGGACG ACGTGAGCGT GGCGCCCGAC GAGCTGTCCG TCACGTTCCA TCTCAATCCG CTCGCGCGCT TCTCCAACGG CGACCCGGTG CGCGCCGCCG ACGTCAAATA TTCTTACGAC ATGCTGATGG GCAAGGGCGC GAGCCCCGCC TACCGCAGCA TGACGGCGGA CGTGTCCAAG GTGACGGTGA TGGATGAGCG CACCATCCGC TACGACTTCA AGCGCCGCAA CAAGGAGCTG CCGCTGATCG TCGGCAACCT GCCGGTGTTC TCGCCCAAGT GGGGCAAGGG CAGCGGCAAG CCGGACGACC CGGAGGGCGG CAAGGACACG CCCTTCGACA AGATCACCTT CCAGGAGCCG ATCGGCAGCG GGCCGTACCT CATCGAGCGC TACGACGGCG CGCGCGGCAT CACCTTCCGC CGCAACCCCG ACTACTGGGG CCGCAACCTG AACGTGCGGC GCGGCGCGTA CAACTTCGAG CACATCCAGT ACAAGCTCTA CAAGGACGAG ACCGCGCGCC TGGAGGCCTT CAAGGCCGGC GAGTACGACG CCATGGTCGA GTATCGCGCC AAGAACTGGG CGAAGAGCTA CGTGGGTGTG AAGTTCCGCA GCGGCGAGCT GGTCAAGAGC GAATTTCCGC ACCGCAACGG CGCCGGCATG CAGGGCTTCG TGATGAATCT GCGTAAGCCG ATCTTCCGCG ACCTGCGCGT GCGCCGTGCC CTGGTGCTGG CGCTCGACTT CGAGTGGCTG AACCGCCAGC AGTTCTACGG CGCCTATCGC CGGCTCGACA GCTACTTCGC CAACAGCGAG CTGGCCGCGT CCGACTCCGT CACCGGGCAG CCCGGCAAGG GCGAGCTTGC CCTGCTGGAG CCGCTGCGCG GCAAGCTCGA TGCGGAGGTG TTCGGCGTGC TGCAGGCGCC GCCGTCGACC GATCCGCCCG GCTCGCTGCG CGACAACCTG CGCCAGGCGC GGCGCTTGCT CGCCCAGGCC GGCTGGACGT ACAGCGACGG CGCGCTGCGC AACACCAAGG GCGAGCCGTT CACCTTCGAG ATGCTCGACG ACGGCGGCGC CATGAGCCGC GTGATGGCGG CCTATGTGCG CAACCTGGAG AAGCTCGGCA TCCGCGTCAA CCAGCGCATC ACCGACTACG CGCTGTACCA GAAGCGCCTG GAAGAATTCG ACTTCGACAT GATCTCGCTG CGGTTTCCCG ATTCGTCGAG CCCCGGCAAC GAGCTGAAGG ACCGCTTCGG CTCGGCGGCG GCCGACGAGC AGGGCTCCGA CAACCTGATC GGCCTGAAGT CGCCGGCGGT GGATGCGCTG ATCGACGACG TGCTGCGCGC GGGCAACCGC GAGGAACTCG TGACGGCATC GCGCGCGCTC GACCGCGTGC TGATGCAGGG CTGCTACGTC ATCCCGCACT GGTATGCGCC CACCCATCGC GTGGCCTACA ACCGGAACCT GATGTACCCG GATCGCCTGC CGTACTACTA CTCGGCCGAG GGCTGGGTGC TGACGGCCTG GTGGCGCATT CCCGGGTCCC CGAAATAA
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Protein sequence | MSVLGAALKR LAMMTWGLAA SLSAASAWAA HGYAEYGDLK YPAGFTHFAY LNPKAPIGGT LALGNPDRRT SFDKFNPYTI KGTAAPGLNA LVFESLLIGS WDETASGYGL LADDVSVAPD ELSVTFHLNP LARFSNGDPV RAADVKYSYD MLMGKGASPA YRSMTADVSK VTVMDERTIR YDFKRRNKEL PLIVGNLPVF SPKWGKGSGK PDDPEGGKDT PFDKITFQEP IGSGPYLIER YDGARGITFR RNPDYWGRNL NVRRGAYNFE HIQYKLYKDE TARLEAFKAG EYDAMVEYRA KNWAKSYVGV KFRSGELVKS EFPHRNGAGM QGFVMNLRKP IFRDLRVRRA LVLALDFEWL NRQQFYGAYR RLDSYFANSE LAASDSVTGQ PGKGELALLE PLRGKLDAEV FGVLQAPPST DPPGSLRDNL RQARRLLAQA GWTYSDGALR NTKGEPFTFE MLDDGGAMSR VMAAYVRNLE KLGIRVNQRI TDYALYQKRL EEFDFDMISL RFPDSSSPGN ELKDRFGSAA ADEQGSDNLI GLKSPAVDAL IDDVLRAGNR EELVTASRAL DRVLMQGCYV IPHWYAPTHR VAYNRNLMYP DRLPYYYSAE GWVLTAWWRI PGSPK
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