Gene RSc1147 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1147 
Symbol 
ID1219962 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1202919 
End bp1203704 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content67% 
IMG OID637237516 
Producthypothetical protein 
Protein accessionNP_519268 
Protein GI17545866 
COG category[R] General function prediction only 
COG ID[COG1235] Metal-dependent hydrolases of the beta-lactamase superfamily I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.385681 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGTGA GATTCGCCAG TCTCGGCAGC GGCAGCGACG GTAATGCGCT GCTCGTCGAA 
TCCACCGATG GAACGACGAG CACGCGCATC CTGCTCGATT GCGGATTCGG TATCCGCGAG
ACCGTGCGCC GGCTTGAACG CCTGGGCTGC GCGCCGGCGT CCCTCGACGC CATTCTCGTC
ACGCACGAGC ATGGCGACCA TATCGGCAGC GCCTATGCGT TCGCCGCCAA ATACAGTGTT
CCGGTCTGGA CCAGCCACGG CACGTATCGC GCCACGGCAT CGCTGCGCGG CGCCGACCGG
GCCGCCGTCC GTTTCTGCCG TGCCGACGAT GCCTTCAGCA TCGGCGATCT GCGGATCCTG
CCCTACACCG TGCCACACGA TGCGCGCGAG CCCTTGCAGT TCATCTTCGA CGACGGCGCG
CGGCGCCTCG GTGTGCTGAC GGATGCCGGC ATGTCGACGG AGTACCTGTG CGGGCACCTG
ACCGGTCTGC ATGCCTTCGT GCTCGAATGC AATCACGACC GTGAGATGCT GGCCAACTCG
GCGTATCCGT GGTCATTGAA GCAGCGGATC GGGGGAGACT TCGGGCACCT GGCCAATGAC
ATCGCGGCGG CGATCCTGGC GCGCGTCCGG CACGACGGTC TTCATACCGT CGTGGCCGCG
CATCTTTCCA AGCAGAACAA CACGCCCGAG CTGGCGGCGG CGGCGATCGC GTCGGCGCTG
GGCGTGCCTG CGGGCGACGT GCCGATCGCG GATCAGGAAG CGGGCCTCGG CTGGCAAGCC
GTCTGA
 
Protein sequence
MAVRFASLGS GSDGNALLVE STDGTTSTRI LLDCGFGIRE TVRRLERLGC APASLDAILV 
THEHGDHIGS AYAFAAKYSV PVWTSHGTYR ATASLRGADR AAVRFCRADD AFSIGDLRIL
PYTVPHDARE PLQFIFDDGA RRLGVLTDAG MSTEYLCGHL TGLHAFVLEC NHDREMLANS
AYPWSLKQRI GGDFGHLAND IAAAILARVR HDGLHTVVAA HLSKQNNTPE LAAAAIASAL
GVPAGDVPIA DQEAGLGWQA V