| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1117 |
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| Symbol | |
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| ID | 1219932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1173762 |
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| End bp | 1175012 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637237486 |
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| Product | lipoprotein releasing system transmembrane |
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| Protein accession | NP_519238 |
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| Protein GI | 17545836 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0172186 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.243011 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAATTTC CATACGAATG GCAGATCGGC TGGCGTTACA CGCGCGCGAG CAAGCGCGCC
AGCCGCAACA GCTTCATTTC CTTCATCTCG CTCATCTCCA TGCTCGGCAT CGCGCTGGGC
GTGGCCGCGC TGATCGTCGT GCTGTCGGTC ATGAACGGCT TCCAGAAGGA GGTGCGCGAC
CGCATGCTGT CGGTGCTGTC GCACATCGAG ATCATGGCGC CGGGCAGCCT GCCCGACTGG
CAGCGCACCG CGAATGAGGC GATGCAGAAC AAGGAGGTCG TGGGCGCGGC GCCGTACGTG
GGCGCGCAGG CCATGATCAC GCGCGACGAC GCGGTGCGCG GCGTGCTGCT GCGCGGCGTG
TCGCCGGCCG ACGAGCCCAA GGTGTCGGAC ATCGCCAAGG ATTTCAAGTC GGGCACCATC
GACGATCTCC GGCCCGGCGA ATTCGGCATC GCGCTGGGCG CCGAGATGGC GCGCGGCCTG
GGCGTGCGCC AGGGCGACAA GGTCACGCTG GTGGCCCCGC AGGGCACCAT CACGCCGGCG
GGCGTGCTGC CGCGCCTGAA GCAGTTCACC GTGATCGGCA CGTTCGAATC CGGCCACTAC
GAGTTCGACA GCTCGCTCGC CCTCATCAAC ATGGAGGATG CCGAGCGGCT GTTCCGGCTG
ACCGGCCCGA CCGGCGTGCG CCTGAAGCTG GTCGATATGC AGCGCGCGCC GCAGGTGGCC
GAGGCGCTGT CGCGCACGCT GACCGGCGAG CTGTACATCC GCGACTGGTC GCGCCAGAAC
AAGAACTGGT TCGCCGCCGT GCAGACCGAG AAGAAGATGA TGTTCATCAT CCTCACGCTG
ATCATCGCGG TGGCGGCGTT CAACCTGGTC TCCACGCTGG TGATGACGGT GACCGACAAG
CAGGCCGACA TCGCCATCCT GCGCACGATG GGCGCGCAGC CGGGCTCCAT CATGAAAATT
TTTATTGTGC AGGGTGTGGC GATCGGCTTT ATTGGTACCC TTTTGGGCGT GCTGTTCGGC
ACGCTGATCG CTTACAACAT CGACGTGATC GTGCCGGCCA TCGAGCATCT CTTCGGCGTG
CAATTCCTGC CCAAGGACAT CTACTTCATC AGCGAACTGC CCTCGGACCC CCGCGTGAAC
GACATCGCAA CCATCGGCCT CATTTCCTTC GTGCTCGCCT CGGTGGCGAC GCTGTATCCG
AGCTGGCACG CCTCGCGCGT GAACCCGGCG GAGGCGCTGC GCTATGAGTG A
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| Protein sequence | MKFPYEWQIG WRYTRASKRA SRNSFISFIS LISMLGIALG VAALIVVLSV MNGFQKEVRD
RMLSVLSHIE IMAPGSLPDW QRTANEAMQN KEVVGAAPYV GAQAMITRDD AVRGVLLRGV
SPADEPKVSD IAKDFKSGTI DDLRPGEFGI ALGAEMARGL GVRQGDKVTL VAPQGTITPA
GVLPRLKQFT VIGTFESGHY EFDSSLALIN MEDAERLFRL TGPTGVRLKL VDMQRAPQVA
EALSRTLTGE LYIRDWSRQN KNWFAAVQTE KKMMFIILTL IIAVAAFNLV STLVMTVTDK
QADIAILRTM GAQPGSIMKI FIVQGVAIGF IGTLLGVLFG TLIAYNIDVI VPAIEHLFGV
QFLPKDIYFI SELPSDPRVN DIATIGLISF VLASVATLYP SWHASRVNPA EALRYE
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