Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1082 |
Symbol | |
ID | 1219894 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 1140010 |
End bp | 1141194 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637237448 |
Product | porin transmembrane protein |
Protein accession | NP_519203 |
Protein GI | 17545801 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000550491 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGACA AGCGAACCGT CTTTGCCTTC AACCCGCTCT GCGCCTGCAT TGCGCTGCTG GGCGCGGGCG TATCGATGCA GGCCGCGGCG CAATCGTCGG TCACGCTGTA CGGCGTCGTC GATACGGCAT TCGCCTATTC GAGCAACCAG GGCGGCCATT CGAACACCTA CATGAGCCAG GGCAACCTGC TGGCCAGCAA GTTCGGGCTG TCCGGCACCG AGGACCTGGG CGGCGGCACC CAGGCGCTGT TCCGGCTGGA GAGCGGCTTC AACTCCGCCA CGGGCGCACA GGCCGCGGCG GGCTATCTGT TCAACCGGCT GGCGTTCGTC GGCCTCAGCG ACAAGACTTA CGGCGCGCTG ACCCTCGGCC GCCAGTACAC GCCGTACTTC CAGTACGTGG CGGCCCTGGG CCCGACCAAC GTGCTGACCG GGGCCACCGG CGCGCACCCG GGCGATGTGG ATGCGCTCGA CACGACCCTG CGCTTCAACA ACTCCGTCAC CTACACGCTG CCCGTGATCG GCGGCCTGCA GGCGGGGGTG CAGTACGGCA TGGGCGAGCA GCCGGGCAGC ATCTCGGGCG GCAGCAGCTT CAGCGCGGCG CTGCGCTACG ACTACCAGGC CTTTGCCTGG TCCGCCGGCT ATATCCACCT GAAGAACATC CCGACCAGCA ATTCGGTCGG CACCTTCGCC AACAACTCGC CCGTCAACAG CGGCTATGCG TCGGCGGACA GCGCCCAGCT GATCGCCACC GCGGCGCGCT ATACGTTCGG CAAGCTGATG GTCGGCCTGA ACTATTCGAA CGTCCAGTAC AAGCCGGGTG CGGGATCGCT GTTCACGCAA GCCGCGATGT TCAACAGCTA TGGCCTGATC TCCACCTATG CGCTGACGCC GGCGATCACC GTGGCGGCCG GCTACAGCTA TACCGCCGAG AAGGCCCGCA ACGGCATCAG CTCGCCGGCG CGCTACCACC AGTTCTCGAT GGAGCAGACC TACGCGCTGT CCAAGCGCAC CGCGTTCTAC GCGCTCGAGG CGTACCAGAA GGCCAGCGGC AAGACCTTGC GCACGGTGGG CGGCGTCAGC ACCATCGTCG ATACCGTGGC TTCGGTGGGG GACTCGCAGA ACGGCACGCC GTCGAGCACC GGTCACCAGT TCGTGGGCAT GGTGGGTATC CGCCATCTGT TCTGA
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Protein sequence | MNDKRTVFAF NPLCACIALL GAGVSMQAAA QSSVTLYGVV DTAFAYSSNQ GGHSNTYMSQ GNLLASKFGL SGTEDLGGGT QALFRLESGF NSATGAQAAA GYLFNRLAFV GLSDKTYGAL TLGRQYTPYF QYVAALGPTN VLTGATGAHP GDVDALDTTL RFNNSVTYTL PVIGGLQAGV QYGMGEQPGS ISGGSSFSAA LRYDYQAFAW SAGYIHLKNI PTSNSVGTFA NNSPVNSGYA SADSAQLIAT AARYTFGKLM VGLNYSNVQY KPGAGSLFTQ AAMFNSYGLI STYALTPAIT VAAGYSYTAE KARNGISSPA RYHQFSMEQT YALSKRTAFY ALEAYQKASG KTLRTVGGVS TIVDTVASVG DSQNGTPSST GHQFVGMVGI RHLF
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