Gene RSc1082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1082 
Symbol 
ID1219894 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1140010 
End bp1141194 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content66% 
IMG OID637237448 
Productporin transmembrane protein 
Protein accessionNP_519203 
Protein GI17545801 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000550491 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGACA AGCGAACCGT CTTTGCCTTC AACCCGCTCT GCGCCTGCAT TGCGCTGCTG 
GGCGCGGGCG TATCGATGCA GGCCGCGGCG CAATCGTCGG TCACGCTGTA CGGCGTCGTC
GATACGGCAT TCGCCTATTC GAGCAACCAG GGCGGCCATT CGAACACCTA CATGAGCCAG
GGCAACCTGC TGGCCAGCAA GTTCGGGCTG TCCGGCACCG AGGACCTGGG CGGCGGCACC
CAGGCGCTGT TCCGGCTGGA GAGCGGCTTC AACTCCGCCA CGGGCGCACA GGCCGCGGCG
GGCTATCTGT TCAACCGGCT GGCGTTCGTC GGCCTCAGCG ACAAGACTTA CGGCGCGCTG
ACCCTCGGCC GCCAGTACAC GCCGTACTTC CAGTACGTGG CGGCCCTGGG CCCGACCAAC
GTGCTGACCG GGGCCACCGG CGCGCACCCG GGCGATGTGG ATGCGCTCGA CACGACCCTG
CGCTTCAACA ACTCCGTCAC CTACACGCTG CCCGTGATCG GCGGCCTGCA GGCGGGGGTG
CAGTACGGCA TGGGCGAGCA GCCGGGCAGC ATCTCGGGCG GCAGCAGCTT CAGCGCGGCG
CTGCGCTACG ACTACCAGGC CTTTGCCTGG TCCGCCGGCT ATATCCACCT GAAGAACATC
CCGACCAGCA ATTCGGTCGG CACCTTCGCC AACAACTCGC CCGTCAACAG CGGCTATGCG
TCGGCGGACA GCGCCCAGCT GATCGCCACC GCGGCGCGCT ATACGTTCGG CAAGCTGATG
GTCGGCCTGA ACTATTCGAA CGTCCAGTAC AAGCCGGGTG CGGGATCGCT GTTCACGCAA
GCCGCGATGT TCAACAGCTA TGGCCTGATC TCCACCTATG CGCTGACGCC GGCGATCACC
GTGGCGGCCG GCTACAGCTA TACCGCCGAG AAGGCCCGCA ACGGCATCAG CTCGCCGGCG
CGCTACCACC AGTTCTCGAT GGAGCAGACC TACGCGCTGT CCAAGCGCAC CGCGTTCTAC
GCGCTCGAGG CGTACCAGAA GGCCAGCGGC AAGACCTTGC GCACGGTGGG CGGCGTCAGC
ACCATCGTCG ATACCGTGGC TTCGGTGGGG GACTCGCAGA ACGGCACGCC GTCGAGCACC
GGTCACCAGT TCGTGGGCAT GGTGGGTATC CGCCATCTGT TCTGA
 
Protein sequence
MNDKRTVFAF NPLCACIALL GAGVSMQAAA QSSVTLYGVV DTAFAYSSNQ GGHSNTYMSQ 
GNLLASKFGL SGTEDLGGGT QALFRLESGF NSATGAQAAA GYLFNRLAFV GLSDKTYGAL
TLGRQYTPYF QYVAALGPTN VLTGATGAHP GDVDALDTTL RFNNSVTYTL PVIGGLQAGV
QYGMGEQPGS ISGGSSFSAA LRYDYQAFAW SAGYIHLKNI PTSNSVGTFA NNSPVNSGYA
SADSAQLIAT AARYTFGKLM VGLNYSNVQY KPGAGSLFTQ AAMFNSYGLI STYALTPAIT
VAAGYSYTAE KARNGISSPA RYHQFSMEQT YALSKRTAFY ALEAYQKASG KTLRTVGGVS
TIVDTVASVG DSQNGTPSST GHQFVGMVGI RHLF