Gene RSc1058 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1058 
Symbol 
ID1219867 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1111370 
End bp1112887 
Gene Length1518 bp 
Protein Length505 aa 
Translation table11 
GC content67% 
IMG OID637237421 
Productperiplasmic protease signal peptide protein 
Protein accessionNP_519179 
Protein GI17545777 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.200885 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTACCG CTCGAACCGT TTACGCCTTG CGTCTGCTTT GCGTTGCCGC CGTCTTCGCT 
GCCGGTGGCG CGCTGATGCC GGCTTACGCG CAGAACGCCA CCGGTAGCGT GGCGACGGGC
ACCTATGGCC TGCCTGACTT TGCCGATCTG GTCGAAAAGG TCAGCCCGGC GGTGGTCAAT
ATCCGCACCA CCGAGAAGGT GCGGATGCAG AACAACCCGA GCGATGACGA CATGGCCGAG
TTTTTCCGCC GCTTCTTCGG CGTACCGATG CCGGGTACGC CGGGGCAGGG GCAGGGCCAG
AAGCGCCGCA ACGCCCCGCC GCAGGCCGAG GAGGAGCAGA GTCGCGGCGT CGGCTCCGGC
TTCATCATGT CGGGCGACGG CTATGTGCTG ACCAACGCTC ACGTGGTCGA AGGCGCGGAG
ACGATCTACG TGACGCTGAC CGACAAGCGT GAATTCAAGG CCAAGCTGAT CGGCTCCGAC
AAGCGCACCG ATGTGGCGCT GGTCAAGGTG GAGGCCACCG GCCTGCCGAG CCTGAAGCTG
GGCGATTCGG ACAAGGTGCG TGTGGGCGAG TGGGTGCTGG CGATTGGTTC GCCGTTCGGG
CTGGACAACA CCGTCACCGC GGGCATCGTG TCGGCCAAGG GGCGTGACAC CGGCGATTAT
CTGCCGTTCA TCCAGTCCGA CGTGGCCGTG AATCCCGGCA ACTCGGGCGG CCCGCTGATC
AACCTGCGTG GCGAGGTGAT CGGCATCAAC AACCAGATCT TCAGCCAGAG CGGCGGCTAC
ATGGGCATCT CGTTCGCGAT TCCGATCGAT GAAGCGATGC GCGTGGCCGA GCAGCTCAAG
ACGCAAGGCC GGGTGACGCG CGGCCGCATC GGTGTGGCGA TCGACAATGT GCCGAAGGAC
GCAGCGGAGT CGCTGGGCCT AGGCCGTGCG CGTGGCGCCT ATGTGGGCAA TGTCGAGTCG
GGTGGCCCCG CCGACAAGGC AGGCATCGAG GCCGGCGACA TCGTCCTGAA ATTCAATGGG
CGCGACGTCG AGAAGGCCGG TGACCTGCAG CGTCAGGTCG GCGAGAGCAA GCCTGGTACG
CGCGCCACCG TGCAGGTGTG GCGCAAGGGC GCGACGCGTG ATCTGACGGT GACGGTGGCC
GAACTGCAGC CCGATACCAA GGTGGCGCAG CGGGGCAAAG GTGGCCAATC CGACAATGGC
CAGCCGGGCG CCGGCAAGCA GAATGCGCTT GGGCTGGTGG TGGCCGATCT GTCGGAAGGC
GCGCAGCGAG AGTTCAAGAC GAAGGCAGGC GTCGAGGTGC AGGTGGCGGA TGGTCCCGCC
GCGCGCGCCG GCATCCGCCC GGGAGACGTG ATCCTGCGCG TGGGCGACAC CGATGTCACC
AGCGCCAAGC AATTCAACGA CGTGGTCGGC CGGCTGGACA AGAGTCGCAT GGTGGCGGTG
TTCGTCCGCC GTGGCGATGC CACGCAGGTC GTGACGATGC GACCGAGCAC GGCGCGGGCC
GGCGGCGGCC AGCCGTGA
 
Protein sequence
MRTARTVYAL RLLCVAAVFA AGGALMPAYA QNATGSVATG TYGLPDFADL VEKVSPAVVN 
IRTTEKVRMQ NNPSDDDMAE FFRRFFGVPM PGTPGQGQGQ KRRNAPPQAE EEQSRGVGSG
FIMSGDGYVL TNAHVVEGAE TIYVTLTDKR EFKAKLIGSD KRTDVALVKV EATGLPSLKL
GDSDKVRVGE WVLAIGSPFG LDNTVTAGIV SAKGRDTGDY LPFIQSDVAV NPGNSGGPLI
NLRGEVIGIN NQIFSQSGGY MGISFAIPID EAMRVAEQLK TQGRVTRGRI GVAIDNVPKD
AAESLGLGRA RGAYVGNVES GGPADKAGIE AGDIVLKFNG RDVEKAGDLQ RQVGESKPGT
RATVQVWRKG ATRDLTVTVA ELQPDTKVAQ RGKGGQSDNG QPGAGKQNAL GLVVADLSEG
AQREFKTKAG VEVQVADGPA ARAGIRPGDV ILRVGDTDVT SAKQFNDVVG RLDKSRMVAV
FVRRGDATQV VTMRPSTARA GGGQP