| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1019 |
|---|
| Symbol | nifS |
|---|
| ID | 1219828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1072986 |
|---|
| End bp | 1074203 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637237382 |
|---|
| Product | pyridoxal-phosphate-dependent aminotransferase (NIFS protein) |
|---|
| Protein accession | NP_519140 |
|---|
| Protein GI | 17545738 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
|---|
| TIGRFAM ID | [TIGR02006] cysteine desulfurase IscS
[TIGR03402] cysteine desulfurase NifS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.103423 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.217288 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACCC CACATCTCCC CATCTACATG GACTATTCCG CGACGACGCC GGTGGATCCG
CGCGTGGTCG ACAAGATGAT TCCGTACCTG CGCGAGCAGT TCGGCAATCC GGCGTCGCGC
AGCCACGCGT TCGGCTGGGA AGCGGAAAAG GCCGTCGAAA CCGCGCGGGA ACAGGTGGCG
GCGCTGGTCA ATGCCGACCC GCGCGAGATC GTGTGGACGT CCGGCGCGAC CGAGTCCGAC
AACCTGGCGC TCAAGGGTGC GGCCAACTTC TACGGCAGCA AGGGCAAGCA CATCATCACC
GTCAAGACCG AGCACAAGGC CGTGCTCGAT ACGGCGCGCG AGTTGGAGCG CCAGGGCTTC
GAGGTGACCT ACCTTGACGT GCAGGAAAAC GGCCTGATCG ACATCGAGCA GTTCAAGCAG
GCGCTGCGCC CGGACACCAT CCTGGCCTCG GTGATGTCGG TCAACAACGA GATCGGCGTG
ATCCAGGACA TCGAGCAGAT CGGCGAGATC TGCCGCGACA AGGGCGTCAT CTTCCACGTC
GACGCCGCGC AGGCGACCGG CAAGGTGGAG CTCGACCTGC AGAAGCTGAA GGTCGACCTG
ATGTCCTTCT CGGCGCACAA GACGTATGGC CCGAAGGGTA TCGGCGCGCT GTACGTGCGC
CGCAAGCCGC GCATCCGCGT CGAAGCGCAG ATGCACGGCG GCGGCCACGA GCGCGGCATG
CGCTCGGGCA CGCTGCCGAC GCACCAGATC GTCGGCATGG GCGAGGCCTT CCGCATCGCG
CGTGAAGAAA TGGCCACCGA GAACGAGCGC ATCCGCATGC TGCGCGATCG CCTGCACCGC
GGCCTGACCG CAATGGAAGA GGTCTACGTC AACGGCGACA TGGAGCGCCG CGTGCCGCAC
AACCTCAACA TCAGCTTCAA CTTCGTCGAA GGCGAGTCGC TGATCATGGC GATCAAGGAT
GTCGCCGTGT CGTCGGGCTC CGCGTGCACG TCGGCATCGC TGGAACCGTC CTACGTGCTG
CGCGCCCTGG GCCGCAACGA CGAACTGGCC CACAGTTCGA TCCGCTTCAC GGTCGGCCGC
TTCACCACCG AGCAGGAAGT CGACTACGTG GTCGAGCTGC TCAAGAGCAA GATCGGCAAG
CTGCGCGACC TGTCCCCGCT GTGGGAGATG TACAAGGACG GCGTGGATCT GAACAGCATT
CAATGGGCGG CGCACTGA
|
|---|
| Protein sequence | MSTPHLPIYM DYSATTPVDP RVVDKMIPYL REQFGNPASR SHAFGWEAEK AVETAREQVA
ALVNADPREI VWTSGATESD NLALKGAANF YGSKGKHIIT VKTEHKAVLD TARELERQGF
EVTYLDVQEN GLIDIEQFKQ ALRPDTILAS VMSVNNEIGV IQDIEQIGEI CRDKGVIFHV
DAAQATGKVE LDLQKLKVDL MSFSAHKTYG PKGIGALYVR RKPRIRVEAQ MHGGGHERGM
RSGTLPTHQI VGMGEAFRIA REEMATENER IRMLRDRLHR GLTAMEEVYV NGDMERRVPH
NLNISFNFVE GESLIMAIKD VAVSSGSACT SASLEPSYVL RALGRNDELA HSSIRFTVGR
FTTEQEVDYV VELLKSKIGK LRDLSPLWEM YKDGVDLNSI QWAAH
|
|---|
| |