Gene RSc0900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0900 
Symbol 
ID1219708 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp949379 
End bp950035 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content63% 
IMG OID637237262 
Productsignal peptide protein 
Protein accessionNP_519021 
Protein GI17545619 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value9.37501e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.517414 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAT TTACCAAGCT CGCGTTCGCT GCAGCTGCGG TAGCCATGGC TGCGTCCGCT 
TACGCTCAGT CGGTGCCCTA CGAGAAGAAG GCCGTCAACG ACAACTGGGG TAACGGTACG
AGCGAGTGGG TCTGGAAGAA CGGCACGAAC GAACTCTGCT GGCGCAATGG TTTCTGGACG
CCGGCAACTG CCAATGTGCA GTGCGACGGC GCCCTGGCTC CGGCTGCCGC TCCGCAAGCA
CAACCGACCC CGGCCGCCAA GCCGGTCGTT GGCTCGGAGA AGGTCACGTT CGCGGCTGAC
GCCCTGTTCG ACTTCGACAA GGCTGTGCTG AAGCCCGAAG GCAAGTCCAA GCTGGACGAC
CTGGTCTCGA AGCTGAAGGG CATCACCCTG GAAGTCGTGA TCGCCGTGGG TCACACCGAC
TCGTTCGGTT CGGACAAGTA CAACGACCGC CTGTCGGTCC GCCGCGCCGA AGCCGTGAAG
GGCTACCTGG TGAGCAAGGG CATCGAAGCC AACCGCGTCT ACACGGAAGG CAAGGGCAAG
CGCCAGCTGA AGGTGGATCC GAAGTCCTGC AAGGGCGCAC GCAAGGCACA AATCGCCTGC
CAACAGCCGA ACCGCCGCGT GGAAGTCGAA GTGGTCGGTA CGCGCAGCGC GCAGTAA
 
Protein sequence
MKKFTKLAFA AAAVAMAASA YAQSVPYEKK AVNDNWGNGT SEWVWKNGTN ELCWRNGFWT 
PATANVQCDG ALAPAAAPQA QPTPAAKPVV GSEKVTFAAD ALFDFDKAVL KPEGKSKLDD
LVSKLKGITL EVVIAVGHTD SFGSDKYNDR LSVRRAEAVK GYLVSKGIEA NRVYTEGKGK
RQLKVDPKSC KGARKAQIAC QQPNRRVEVE VVGTRSAQ