Gene RSc0723 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0723 
Symbol 
ID1219529 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp769004 
End bp769489 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content61% 
IMG OID637237083 
Producttype-4 fimbrial pilin-like transmembrane protein 
Protein accessionNP_518844 
Protein GI17545442 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4968] Tfp pilus assembly protein PilE 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCACAC ACCGTTCGCC CCCCCTGCCC CATCAGCGTG GCTTCACGCT GATCGAGCTG 
ATGATTGTCG TGATCGTCGT CGCCATCCTG TCGACGATCG CGTATCCGTC CTATACGCAG
TTCGTGCAGA AAAGCCGGCG TACGCAGGCC AAGGCCGCGC TGATGGAAAA CATGCAGCTG
TTCGAGCGGC ACTTCGCGCA AGCGAACACG TATGCCGCCA GCTCCACTGA CCTGACCCAC
GCGTGGAACG GGTTCAGGAC ATATTCGGGC GATGCGCAGA CCAGCACCAG CTACCAGATC
TCGGCCGTGG GCTGCTCCGG CAGCGCGAAC GTGGACCAGT GCGTCGAACT GCAAGCACAG
CCACCCAACA ACGGCAAGGA CGATCCGACT TGCGGCACGC TGGTCTATCG CAGCACGGGT
GAAAAGCTAA ACATCCTTTT GGGGAAATCC GTCCCCGAGT CGCCCACCAC GACCGGATGC
TGGTAA
 
Protein sequence
MRTHRSPPLP HQRGFTLIEL MIVVIVVAIL STIAYPSYTQ FVQKSRRTQA KAALMENMQL 
FERHFAQANT YAASSTDLTH AWNGFRTYSG DAQTSTSYQI SAVGCSGSAN VDQCVELQAQ
PPNNGKDDPT CGTLVYRSTG EKLNILLGKS VPESPTTTGC W