Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0695 |
Symbol | |
ID | 1219500 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 743805 |
End bp | 745259 |
Gene Length | 1455 bp |
Protein Length | 484 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637237054 |
Product | porin (omp) ABC transporter protein |
Protein accession | NP_518816 |
Protein GI | 17545414 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0288188 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGTTG CTCGCAGTAG CCGTGCGCGG ATGGCCGCGC GCGGTTCGCT TATTGTGTTG TGCTGGTCGA TGGCGCCGAT GCTGGCCTGG GCCCAGGCCG ATGCGCCGAC GACCGACCTG CTGTCGGCCT ACCGCGCCGC GCTCGCCAAT GATCCGCAAT TTGCTGCCGC GCGCGCGCAA TCCGTCGCGC AGCACGAGAA GCTGACGCAG GGCCGCTCCG GCCTGCTGCC GCAGATCGGC GCCGCCTGGA GTTCGACGCG CATCATCTTC GATCAGACCG CGCCTGCCGA ATTCAACAAG ACCTTCTCGT CGACAGGCTG GACGCTATCG CTGTCGCAGC CGCTGTTCCG CTGGGACCGC TGGGAAACCT ACAAGCAGGG CGAGATCGCC GCCGCCGCCT CGGAAGCCAG CCTGGCGCAG GCGCAGCAGG ACCTGATCAC GCGCACGGCG CAGACTTACT TCGACGCGCT CAACGCCCAG GACACGCTGC AGTTGGTCCT TGCGCAGCGC GATGCCATCC AGCAGCAGTA CGAGCAGGCA CGCCGCAACT TCGATGTCGG CAACGCCAAC ATCACCGACG CCAACGATGC CCAGGCCCGG CGCGATGCGA TCGACGCCAC CGTCATCGCC GCCCGCAGCG ACTTCGAGGT CAAGCAGTCC GCGCTCAGGC AGATCACCGG CGAGCCGGTC GGCAAGCTGG CGGGCGTGCG CACGGGGGTC GCGTTGCCGC AGCCCGAGCC TGCTGCGCCG GAACGCTGGG TGGAACAGGC CCGCGGCAGC AACCCGCAGG TGGCGCTGGC CCAGTACAAC CTGCAGAACG CCGAGCACGA CGTGAAGAAG GCCTCGGCCG GGCACCTGCC CTCCGTCGAC CTGGTCGCGC AGACCGGCCA CACCAACGCC AGCGGCAACC AGTACCTGCC GTCCCTGCCG GGCGGCGCGC GCTTCGACAG CTCGCAGATC GGCGTGCAGG TCTCGATTCC CCTCTATGCG GGCGGTGCGA TCCAGTCACG CGTGCGCGAG AGCATCGCGC TGGAAACCGA GGCCGCGAGC GACCTCGAGT ACGCCCGCCG TACCGTCGAG CAGGGCGCGC GGCAAGCCTA TATCGGCGTG ATCGCGGGGC TCGCGCAGGT GAAAGCGCTG GAAGCGGCCG AGGTATCGGC GCGCACGGCC TATGATTCGA ACCAGCTCGC CTACGGCGTG GGGGTGCGCA TCGGCACCGA CGTGCTCAAC GCGCAGGCAC AGCTGTTCTC GGCCCGGCGC GATCTGGCAC GCGCGCGCTA CGACACCATC GTCAATGGCC TGCGCCTGAA ATCCGCCGCC GGCTCGCTGA GCGAGGCGGA CATGGTGCAG GTCAACACGC TGCTGACCGC CAACGCCTCG GAAGATCTGA CCGCCCTGCC CCGGCCGGCG GCACGGGCCA AGCCCGCCGC CCCGGCCGCC AACGCCAAGC GCTGA
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Protein sequence | MTVARSSRAR MAARGSLIVL CWSMAPMLAW AQADAPTTDL LSAYRAALAN DPQFAAARAQ SVAQHEKLTQ GRSGLLPQIG AAWSSTRIIF DQTAPAEFNK TFSSTGWTLS LSQPLFRWDR WETYKQGEIA AAASEASLAQ AQQDLITRTA QTYFDALNAQ DTLQLVLAQR DAIQQQYEQA RRNFDVGNAN ITDANDAQAR RDAIDATVIA ARSDFEVKQS ALRQITGEPV GKLAGVRTGV ALPQPEPAAP ERWVEQARGS NPQVALAQYN LQNAEHDVKK ASAGHLPSVD LVAQTGHTNA SGNQYLPSLP GGARFDSSQI GVQVSIPLYA GGAIQSRVRE SIALETEAAS DLEYARRTVE QGARQAYIGV IAGLAQVKAL EAAEVSARTA YDSNQLAYGV GVRIGTDVLN AQAQLFSARR DLARARYDTI VNGLRLKSAA GSLSEADMVQ VNTLLTANAS EDLTALPRPA ARAKPAAPAA NAKR
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