Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0672 |
Symbol | |
ID | 1219477 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 717024 |
End bp | 723170 |
Gene Length | 6147 bp |
Protein Length | 2048 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637237031 |
Product | putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein |
Protein accession | NP_518793 |
Protein GI | 17545391 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.843202 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATCATC CATCTTCCGC CCAGCCCGAA TCCGCCTCCC TCGAGGCGGC CGGGGCCGTC GCTGCGGCGC GTCCTGTTCC TTCCGCGCCG GCGCGCGATC TGTCCGCGCT GGCCTGGGTT GCGCCCAACA TGCGCGCCGC GCTGGACGAC GCGGTCCGCG AATTCCGTGA ATACGTTGCC GATGTGGTGG CCAACCCCGA GGTGCTCGGG GCACGCGACA CCACCTCGCT GCGCTTGGCC GGCCAATATC TGCACCAGGC CGCCGGCGCA CTGCTGATCG TCGGCCTGCG CGGCATCGAT GTGTACTGCC AGGCCGCCAA GCGCCTGCTG GAAGCCGTCG ATGCGGGTAC GCTGGTCGCC GATGCGCAGA CCCTGGACAT CTTCTCGCGC GCCGTGCAGG CGCTGCAGGA GTATGTCGCC GACCTGATGG CCGGCATGGC CGAAGAGCCG CTGCGCCTGT TCCAGCCCTA TCAGGCCGTG CTCGCCCGCC TGGGCGAAGA GCGCATCCAT CCCGCCGACC TGTGGGCCGA CGAACTGCGC CACCTGCCGG CGCTGCTGCT GCCTTCGCGC GATCTGGTGG GCCTGTCGCG CCTGCGCCGT AAATTCGAAA TGGCGCTGCT GGCCGCGCTG CGCCTGCCGA ACACGGCCGG CCCCGAACAC GATCCCGCCG TCGCCGCTGC CGCCTATGCG CCGATGGAAA AGCTGCTGCA CGGCATCCGC GCGCTCGAGC GCGAGCCGCG CCGCACCGGC GACGACCTGC TGCGCGACTT GTGGCTGGTG CTCGCGCTGA CCTTCGGCGC GCTGCGCGCC GGACTGGTTC CGGCCGACAT CACCGGCAAG CGCCTGGCCG CGCGCGTCAA CCTGCTGCTG CGCCAGTATT CGCACAACAA CGTTCACCTG CCGCAAGGGC TGCTGACCGA CGCGCTCTAC CTGCTGGCCG GCATGGCCTA CGGCAACGCC CTCGGCGCGC CGGTCGGGGA CGACACGCTG GGTTCGGACA TCATCGCCTG CGTGCAGGCC TTCTCGATTC CCGCCACGCA TGCGCCGGCC AACGCGCTGC ACACCCATCA CTATTACGCG CTGTTGTCGG CCGAGATGAC CGACACGCTG CAGCGGATCG GCCGCACGCT CGAAACGCTG AGCCAGCAGC CCGCTCCCGT TGCCGACGAG CTCGATACCG CGCTGCAGAC GCTGGCGCTG CACGCCGATG CGCTCGGCCA GCCGGCGCTG TCCGCTCTGA CCCATCGCCT GGGCGAGCCG GCCGACGTGC CCAGCCAAGA CGCGGCGCCG ACGCTGCTGT TTCTCTCGCG CATGCTGGCG CGTCCCTGGG CGCTGCACGG CGAATCGGGC GATCTGCGCA GCGCCTGGTT TGCCGCCCGC TGCAACGAGC TGGCCGAACA CGTGCGCGCG CAGCGCGCCG GCGAGCAGGC GCCGGCACCG GTCTGGCTGT CGCGGCTGAC CGATGAGATC ACGCAGCGCC GCACGCGCGG CGAGCAGGTT CGCGCATTGC AGACGCGGCT CGCCTCTGCC GAGACGCACC TGGATGCGTT CGAGCGCGAA GGCGATGCAA GCGGCGGCCT GAAAGAAGCC AGCCGCCTGT TCGCCGAGAT GCAGGCCACG TTCACCTCGC TGGGCGCTGG CGAAGCGGTG CGCGCCACCG AAGCCGCGCA AGCGACCATC GCCACGCTGG AGGCCCCCGG GCAGGCCGCC GCCGCCGACC GCGAGCACTA CCTGGCCGCG CTGGCCGGCA ACGTCAGCGG CCTGCAGGGC TTCCTCGACG CACTGTCGGC CGGTACCGAG CTGACCGGCG CGCAGATCGA CCAGATCGTG GTCGAGGGCG CGCTGACGTC CGTGGAGCGC GAATCCGCCT GGCGCGACTT CGCGTTCGAT GCCGAGACCG GCATGCTGGT CCGCCGCGAA CCCCAGGTCG ACCTCAACGC CGATGCCGCC GCCGCACAGG CGGATGCCGA CGGCGAGCAT CTGCAATCCC TGCTGGATCG CCTGCTTGCC AAGCAGCCGG TCGACCAGGC CGATCCGCTT GCCGCCGAAC TGCGTACCGC CCTGCACGAA GCGCGCGATG CCGCCGCCAT CGATGACGAT CCGGCCCGCC GCCGCCGTCT GGAAGAGGCC CTGGCGCAGT TCGACGCCTG GCAGGCCGGC AGCCAGGCCG CGCTGGAGCG CATGCAGGCC GCACTGGCGG CGCCCGCGGC CGAAGCGGCC GTGGCGGCAG TCGCCGCGCC GGCCGCGAGC GATGCGCAGT CCATCGACGC AGAACTGCTG GAAATCTTCC TGTTCGAAGC CGACGAGGTG CTCACCGGCG TGCGGACCGA CCTGCAGGCG CTGCACGTCA CCGCGCAGGC GGGCTCGGGC GGTGCCGCCA CCGGTAGCGA TCTGGACCTG CTGACGCAGC TGCGCCGCGC CTTCCATACG CTCAAGGGCT CGGGCCGCAT GGTGGGCCTG ACGCGCTATG GCGAGGCCGC CTGGGCCATC GAACAGGTGA TGAACGTGTG GCTGGCCGAA AGCCGCGTGC CCACGCCCGA CCTGGCCGCG CTGCTGGCGC GAGCCGAGGC GGACCTGTCG GCGTGGACGG CCGCCATTGC GCAAGCGCCG CACGCCGATC ATGCGATCGA GCCGCTGGTG GCGGCCGCCG ACCGCGTGCG CCACGGCGGG CCATTCGTGT GGCTGGAGGC CGTGGCCGAT GCGCCCGCGC CGCAATCGCT GGAGGCACCG GCCGAGCCGG CGGTTTCGCC CGAACCCGCC GCACCGGCAC CGGAACCGCG GCTGCATGTC GTGGAGCCGG TGGACACGCC CGCCGATGCC CCTGTCGCGC CGGAAGCGCC GTTCGCGCCT GTCGAGCCTG TGCTCCAGGC CAACGACGCA GCTTCGCTGT CGTGGGACGA TGTTCCCGTC CTCCCCGCGT CCGATGCGCT GGCAGCCGAG GCACCGGTCC TGGCGCCGGT TTCCGAGCCG GTCGCCGAAG CCGTGACCGC GCCCGAGCCG ATCAGCGAGC CGATGGTGGA GCCGATTGCC GAGCCGGTCG TCGAGCCTGC TGCCATCGAG CCCGTGGCGG AAGCTGCCGC CGCCGAGCCC GCGCCGGCCG AAGCCGACGC CAAGGTGATC CCGTTCCCGT TCGAGCAGAC CGGCACGCCG GAAGAGGCAT CGCACGACGA CGGCATCAAG ATCATCGGCC CCGTGTACAT CAGCGTGGCG CTGTACAACG TCTACCTCCA GGAAGCCGAC GCACTGATTC GCCGCCTGGG CGTGGATTTC TCCGAATGGC GGCACGAAGG CCGCGCCCAG CCGAGCGAGC TGGCGCTGCG CGCCGCGCAT ACGCTGCAGG GCAGCTCCGC CGTGGTGGAG CTCGAGCCGG TGCGCCTGAT CGCCGATGGG CTGGAGCAGG TGCTGCTGAA CCTGGACAGC CGTCCGGTGG CGATGCATCC GGGCGACTTC CGCCTGCTCG ACCAGTCGGT CGAGCGCATG CGCGGCATGC TGCACCAGTT TGCCGCCAGC GTCTGGCCCG AGGCCGATGA CGCGCTGTGC CGCGGCCTGG CCGAGCTGTG CGAGCGCGTG TTGGTGCGCC CGCGCCTGCA GTCCGAAACG GCTCCGCAGG CGCTTGCCGA TGCGGAGACG GTCGAGAACG AGAACCCGGT CATCGGCGAA GACGACGTGC CGGCGATCGC GGCGCCGGAA AGCATCGCGC CGCTTGCGCC GGTCTACGAG CCGCCGGTGG CGGCTGGCCC GGCGGTTGCC GAGCTGGTGC GCCAGGCGCC GTCCGATGCG CTGGATTCGG CCCTGCTGGA AATCTTCCTG GAAGAGGCGC ACGTCGCGCT GCCCGAACTG GGCCAGCAAC TGCGCGCGTG GGAAGCCGCG CCGCAGGACC GCACCGTCTC GGGCCTGCTG CTGCGTAACC TGCACACCGT CAAGGGCAGT GCGCGGATGG CCGGCGCGAT GACGCTGGGC CAGGCCGCGC ACGAAATGGA AAGCGCCGTC GACAACGGCC TGCGCCACAA CCGCGTCGAC GAGGCGCTGT TCCGCAAGCT GTACGTCTGG CTCGACCGCA TCCAGGCCCA CGTCGACGCG CTGGGCGCCG GCAAGCTGCT GCCGCTGGAT GCCGGCTTGC GCGACGCGCC GGAAGCGCCG TCCGCGGCCG CCGGCGACCC GGCGTCCGCG GGTGCGATGC TGCCCGCTGT CGCCGGCGCC ACGAGCGTCG ACCTGACCGG CGCCCGCAGC CCCGAGGCCG AGGCGCTGGA AGTCGCCGAG CGCCAGCGCG CCATGGTGCG CGTGCAGGCA CGCGCGCTCG ATGCGCTGAT CAACGACGCC GGCGAAGTCG GCGCGGCGCG TGCGCGTCTC GAGGCCGAGG TCCAGGCGCT CAAGAGCTAT CTGGCCGAAC TGAACGACAA CGTGGCGCGT CTGCGCGCCC AGGTGCGCGA GATCGAAATC CAGGCCGAAT CGCAGATGGA GTCGCGCATC GCGGATGCCG CCGCGCACTC CGAATCCTTC GACCCGCTGG AGTTCGACCG CTTCACCCGC CTGCAGGAAC TGACGCGGAT GATGGCCGAG TCCGTCAACG ACGTGGCGAC GGTGCAGCAG AACTTGTTCC GCGGCTTCGA TCAGGCTTCG CTGGATCTGG AAACGCAGGC ACGCCTGACG CGCGGTCTGC AGCGCAGCCT GATGCGCGCC CGCATGGTGC AGTTCGATAC CGTCGCCGAC CGTCTGTATC GGGTGGCGCG CCAAGCCGCC GCGGAAACCG GCAAGGAAGT CCGCCTGTTC ATCAAGGGCG GTACGGTGGA ACTGGACCGC AGCGTGCTGG ACCGCATGGG CGGCCCGCTC GAGCACATGA TCCGTAACGC CGTCGCGCAC GGCATCGAGC TTGCAGAGGA GCGCCGCACC AAGGGAAAGT CTCCCGCTGG CGAGCTTACG CTAGAAGTGC AGCAGGAAGG CAACGAGGTC GTACTTCACT TCGTCGATGA CGGCGCCGGC CTGAACCTCG AACGCATCCG CGCCCGCGCG CTGGAGCGCC AGCTGCTGGC ACCCGACGAG GAAGCCAGCG AGGCGCGGCT GACCGAGATG ATCTTCTCGC CCGGCTTCTC CACCGCCCAG CAGGTGTCGG AACTGGCCGG CCGCGGCGTC GGCATGGATG TGGTGCGCGC CGAGACGGTG GCGCTGGGTG GCCGCATCTC GCTGCAGACC ACGCCGAATG TGGGCACGCG CTTCACCATC CACCTGCCGC TGACCACCGC CATCACGCAG GTGCTGCTGG TGCGCGTGGG CGAGCGCGTG TACGCGATCC CCTCGGGCAT GATCGACCAC GTGCAGCAGT TGCGCCCGCA GTTGCTGGCC GAGGCCTACA ACGCCGGCGC GCTGGAATTG CCGGGCGGCC CGGTGCCATT CCACTACTTC GGCGCGCTGC TGGAAGAGGC CCGGCCCGTG ATGGGCGGCC GCAAGTACTC GCCGGCGGTG GTGGTGCGCA GCGGCAACGA TCGCGCGGCC GTGCACGTGG ACGAAGTGAT CGGCAACCGC GAAGTGGTGG TCAAGCACAT CGGTCCGCAC CTCGCGCGTC TGGAAGGCAT CGCCGGGGCG ACCACGCTGG GCGATGGCGA AATCGTGCTG ATCTACAACC CGGTGGTGCT CACGCAGCGC TTCGAACGCG AGGCCGCCGC GCTGGGCCTG CTGCAGGCCG AGCAGGGAAC CAAGGGCGCC GTGGCCGAGC TGTCGCGCAA CGGCAGCACC GATGCCGTGC CCTGCCTGGC CACGCAGCCG ATCGTGATGG TCGTCGACGA CTCGCTCACG GTGCGCAAGG TCACGCAGCG CCTGCTGACG CGTTCCGGCT ACCAGGCCGT GCTCGCGCGC GACGGCGTGG ATGCCCTGCG GCAACTGCAG GAAGTCACGC CGGACGCCAT GCTGGTCGAC ATCGAAATGC CGCACATGGA TGGCTTCGAT CTGACCCGCA ACGTGCGCGC CGACGAGCGC ATCGGCGCCA TGCCGATCAT CATGATCACC TCGCGTTCGG CGGACAAGCA CCGCCGCTAT GCCGCGGAGA TCGGCGTCAA CGTCTACCTG GGCAAGCCCT ACAACGAAGA CGAGCTGCTG CGCCACCTGC GCAACCTGAT CGGTTCGCGG GCACCCGCCG CCGCCAACGC GGGCTGA
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Protein sequence | MHHPSSAQPE SASLEAAGAV AAARPVPSAP ARDLSALAWV APNMRAALDD AVREFREYVA DVVANPEVLG ARDTTSLRLA GQYLHQAAGA LLIVGLRGID VYCQAAKRLL EAVDAGTLVA DAQTLDIFSR AVQALQEYVA DLMAGMAEEP LRLFQPYQAV LARLGEERIH PADLWADELR HLPALLLPSR DLVGLSRLRR KFEMALLAAL RLPNTAGPEH DPAVAAAAYA PMEKLLHGIR ALEREPRRTG DDLLRDLWLV LALTFGALRA GLVPADITGK RLAARVNLLL RQYSHNNVHL PQGLLTDALY LLAGMAYGNA LGAPVGDDTL GSDIIACVQA FSIPATHAPA NALHTHHYYA LLSAEMTDTL QRIGRTLETL SQQPAPVADE LDTALQTLAL HADALGQPAL SALTHRLGEP ADVPSQDAAP TLLFLSRMLA RPWALHGESG DLRSAWFAAR CNELAEHVRA QRAGEQAPAP VWLSRLTDEI TQRRTRGEQV RALQTRLASA ETHLDAFERE GDASGGLKEA SRLFAEMQAT FTSLGAGEAV RATEAAQATI ATLEAPGQAA AADREHYLAA LAGNVSGLQG FLDALSAGTE LTGAQIDQIV VEGALTSVER ESAWRDFAFD AETGMLVRRE PQVDLNADAA AAQADADGEH LQSLLDRLLA KQPVDQADPL AAELRTALHE ARDAAAIDDD PARRRRLEEA LAQFDAWQAG SQAALERMQA ALAAPAAEAA VAAVAAPAAS DAQSIDAELL EIFLFEADEV LTGVRTDLQA LHVTAQAGSG GAATGSDLDL LTQLRRAFHT LKGSGRMVGL TRYGEAAWAI EQVMNVWLAE SRVPTPDLAA LLARAEADLS AWTAAIAQAP HADHAIEPLV AAADRVRHGG PFVWLEAVAD APAPQSLEAP AEPAVSPEPA APAPEPRLHV VEPVDTPADA PVAPEAPFAP VEPVLQANDA ASLSWDDVPV LPASDALAAE APVLAPVSEP VAEAVTAPEP ISEPMVEPIA EPVVEPAAIE PVAEAAAAEP APAEADAKVI PFPFEQTGTP EEASHDDGIK IIGPVYISVA LYNVYLQEAD ALIRRLGVDF SEWRHEGRAQ PSELALRAAH TLQGSSAVVE LEPVRLIADG LEQVLLNLDS RPVAMHPGDF RLLDQSVERM RGMLHQFAAS VWPEADDALC RGLAELCERV LVRPRLQSET APQALADAET VENENPVIGE DDVPAIAAPE SIAPLAPVYE PPVAAGPAVA ELVRQAPSDA LDSALLEIFL EEAHVALPEL GQQLRAWEAA PQDRTVSGLL LRNLHTVKGS ARMAGAMTLG QAAHEMESAV DNGLRHNRVD EALFRKLYVW LDRIQAHVDA LGAGKLLPLD AGLRDAPEAP SAAAGDPASA GAMLPAVAGA TSVDLTGARS PEAEALEVAE RQRAMVRVQA RALDALINDA GEVGAARARL EAEVQALKSY LAELNDNVAR LRAQVREIEI QAESQMESRI ADAAAHSESF DPLEFDRFTR LQELTRMMAE SVNDVATVQQ NLFRGFDQAS LDLETQARLT RGLQRSLMRA RMVQFDTVAD RLYRVARQAA AETGKEVRLF IKGGTVELDR SVLDRMGGPL EHMIRNAVAH GIELAEERRT KGKSPAGELT LEVQQEGNEV VLHFVDDGAG LNLERIRARA LERQLLAPDE EASEARLTEM IFSPGFSTAQ QVSELAGRGV GMDVVRAETV ALGGRISLQT TPNVGTRFTI HLPLTTAITQ VLLVRVGERV YAIPSGMIDH VQQLRPQLLA EAYNAGALEL PGGPVPFHYF GALLEEARPV MGGRKYSPAV VVRSGNDRAA VHVDEVIGNR EVVVKHIGPH LARLEGIAGA TTLGDGEIVL IYNPVVLTQR FEREAAALGL LQAEQGTKGA VAELSRNGST DAVPCLATQP IVMVVDDSLT VRKVTQRLLT RSGYQAVLAR DGVDALRQLQ EVTPDAMLVD IEMPHMDGFD LTRNVRADER IGAMPIIMIT SRSADKHRRY AAEIGVNVYL GKPYNEDELL RHLRNLIGSR APAAANAG
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