| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0656 |
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| Symbol | cpaB |
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| ID | 1219461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 703843 |
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| End bp | 704709 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637237015 |
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| Product | pilus assembly transmembrane protein |
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| Protein accession | NP_518777 |
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| Protein GI | 17545375 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3745] Flp pilus assembly protein CpaB |
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| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.360259 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACC TGCGCATTCT TTCCATGCTG CTGATCGCCA CCATCGCCGG CCTGGCCGCC
ATGCTCTTCG CATCGCGCTG GCTGATCCAG CAAGGCAACA GCGGCACCAC CAAGGTGGCC
GTGGCCGCCG TGGACGTCAA CCTGGGCCAG CGCCTGTCGC CAGAGTTCAT CCGACTGGTC
GACTGGCCTG CGGCCAGCCT GCCGCCGGGC GCGATCTCGG ACGAGCACGC GATCGACGGC
CGGGTCACCC GGACCAGCCT GTCGCCCGGC GAACCGGTGC TGGAATCCAA GCTCACGCCG
GTCGGCACCA AGGGCGGGCT GTCGGCGGTG ATCGCCGACG GCAAGCGCGC CATCACCGTG
CGCGTGAACG ACGTGGTGGG CGTGGCCGGC TTCGCGCTGC CGGGCAGCTA CGTCGACATC
ATCGTCAACA CGCAGCAGGA AACGCCGGAC GGCAAGCCCG CCAAGGGTGC GCAGGCCGAC
CGCGAAGAGC ATTCGATCTC CAAGATCGTG CTCGAGAAGA TCCTGGTGCT GGCCGTGGCT
CAGGAGGTCA ACCGCGACGA GACCAAGCCC AAGGTCGTCA ACGCCGTCAC GCTGGAAGTG
ACGCCGGATG AGGCCGAGAA GCTCGACCTG GCGCGCAGCG TGGGCACGCT TTCGCTGGTG
CTGCGCAATC AGGTGGATCC GCGTCCGGTC GATACCGCCG GCGCGACCAA GAGCACGCTG
CTCAAGGAAC CGGTGGTGGC CACCGTGGCC GTGCCGGTCG TGAAGACCGT GCAAGTCGTC
AAGCGCGTCG CCGCCGTGGA GAGAAAGGCC ACCGGCACGT GCATCGGCGT CATCAGCGGC
ATGCAGCACA ACCAGGAATG CTTCTGA
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| Protein sequence | MKNLRILSML LIATIAGLAA MLFASRWLIQ QGNSGTTKVA VAAVDVNLGQ RLSPEFIRLV
DWPAASLPPG AISDEHAIDG RVTRTSLSPG EPVLESKLTP VGTKGGLSAV IADGKRAITV
RVNDVVGVAG FALPGSYVDI IVNTQQETPD GKPAKGAQAD REEHSISKIV LEKILVLAVA
QEVNRDETKP KVVNAVTLEV TPDEAEKLDL ARSVGTLSLV LRNQVDPRPV DTAGATKSTL
LKEPVVATVA VPVVKTVQVV KRVAAVERKA TGTCIGVISG MQHNQECF
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