Gene RSc0561 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0561 
Symbol 
ID1219366 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp605859 
End bp607544 
Gene Length1686 bp 
Protein Length561 aa 
Translation table11 
GC content71% 
IMG OID637236920 
Productputative signal peptide protein 
Protein accessionNP_518682 
Protein GI17545280 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.611701 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCTCT CTTTCTTCCG GCCGCGCGCC CGCAAGGTGA CGGCCGCCGT GCTGTTGATG 
ACGTGGCTTG CTCCCGTGTC GCCGTTGGCG CTGGCGCAGC CGGCGTCTGT TCCCGCTGCG
CCGGCCGGCG CGGCGGCGGC GGAGCAGGTG CAGAGCAACC TGAACCGCAG CGTGCAGATC
GGCCGCCAGT CGCCGTATCT GCAGAAAGAC GCGACGATCA TCGATGCGCC GACCTACGAG
TTGCCTGACA TGGGCGATCC GTCCACGGCG GCGCTGTCGC CGGAGATGGA GCGCCGTCTG
GGCGACCGCG TGATGCGGCA GATCCGGCGC GACCCGGATT ATGTGCCGGA TCCGCTGCTG
TCGGACTACC TGAACGATAT CGGCTACCGG CTGATCGAGG CGGCGCGACG GCAGCATGTG
GCGGGCAGTA CGTCGGCGTC GAGCTTCGAG CTGTTCGCGG TGCGCGATCC GGGCATCAAC
GCGTTTGCGC TGCCGGGCGG GTATATCGGC GTCAACACGG GCACGCTGGT GGCGACGGAG
AGCGAATCGG AGCTGGCCTC GGTGCTCGGC CACGAGATCG GCCACGTGCT GCAGCGGCAC
ATCGCGCGCG GCATCGACAA GTCGGGCGAG TCGATGTGGA TTGCGCTGGC GTCGATCCTG
CTGGCGGGGC TGGCGGCCAC CAAGAGCGGC GACGCGGCGC AGGCGCTGGC GGTGGGCGGG
CAGGCGGCGG CGGTGTCGAA CCAGCTGGCG TTTTCGCGCG GCGCGGAGCG CGAGGCCGAC
CGCGTCGGCT TTACGCTGCT GACCGGCGCC GGCTACAACC CCGACGGCAT GCCCGATTTC
TTCCGACGGC TGCAGCGCGT GAGCAGCATC GCGGACACCG GCGCCGTTCC CGGCTACGCG
CGCACCCACC CGCTGACCGG CGAGCGCATC GCCGACATGG AAGACCGCGC GCGCGGCCTG
CCGCACCCGC GCCAGCCGCA GCGGCCGGCG TTCGGCTTTG CCAAGGCGCG TGCGCGCGTG
CTGCAGGAGA CCTCGACCAG CGCCTATCTC GACGTGCGCA ATGCGATGCG CTCGCAGCTG
GCCTCCGCGC CGGATGCGCC GGCCGAGAAA CGCGCGGCGC TGTGGTACGG CATCGCCGTC
GCCGAGCAAC TGGCCGGGCA GCTGGACCCC GCGGAGCAGG CGCTGCTCGA AGCGCGGCGG
CTGTACGGCA ACATCCCCGG CCTCACCTCG GGCAGTCCGA GCCTGGATGT GACTGCCATC
GAACTGGCCC GTGCCCGCAA TCGCGTGCCG GAGGCGCTGA CGATGGCACG GGCCGCGCTG
GCGGCGTATC CGCTGTCGCG TGCGGTCGGC ATTACCTATG CGCAGACGCT GCTGGCGGCG
GGCCGCGCGG GCGATGCGAT TCCCTATCTG CAGGACAAGG CGCGCGAGGA CACCGCACAG
CCGATCTGGT GGGACATGCT GGCCCGCGCC TATGCGGACC AGGGCAAGCG CGTCGAGCAG
CATCGCGCGC TGGCCGAGAA GTACGCGCGC GACGGTGCCT GGGGCGCGGC AGTGGAGCAG
CTCAAGCTCG CGCGCGACGC GGGCGATGCG GATTTCTATA CGCTGTCCGA GGTCGATGCG
CGGCTGCACC AGATGGAGCG CCAGTACCGC GAAGAGAAGC AGGAAGAGAA GGCGCTGCCG
AAGTAG
 
Protein sequence
MTLSFFRPRA RKVTAAVLLM TWLAPVSPLA LAQPASVPAA PAGAAAAEQV QSNLNRSVQI 
GRQSPYLQKD ATIIDAPTYE LPDMGDPSTA ALSPEMERRL GDRVMRQIRR DPDYVPDPLL
SDYLNDIGYR LIEAARRQHV AGSTSASSFE LFAVRDPGIN AFALPGGYIG VNTGTLVATE
SESELASVLG HEIGHVLQRH IARGIDKSGE SMWIALASIL LAGLAATKSG DAAQALAVGG
QAAAVSNQLA FSRGAEREAD RVGFTLLTGA GYNPDGMPDF FRRLQRVSSI ADTGAVPGYA
RTHPLTGERI ADMEDRARGL PHPRQPQRPA FGFAKARARV LQETSTSAYL DVRNAMRSQL
ASAPDAPAEK RAALWYGIAV AEQLAGQLDP AEQALLEARR LYGNIPGLTS GSPSLDVTAI
ELARARNRVP EALTMARAAL AAYPLSRAVG ITYAQTLLAA GRAGDAIPYL QDKAREDTAQ
PIWWDMLARA YADQGKRVEQ HRALAEKYAR DGAWGAAVEQ LKLARDAGDA DFYTLSEVDA
RLHQMERQYR EEKQEEKALP K