Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0561 |
Symbol | |
ID | 1219366 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 605859 |
End bp | 607544 |
Gene Length | 1686 bp |
Protein Length | 561 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637236920 |
Product | putative signal peptide protein |
Protein accession | NP_518682 |
Protein GI | 17545280 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.611701 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCTCT CTTTCTTCCG GCCGCGCGCC CGCAAGGTGA CGGCCGCCGT GCTGTTGATG ACGTGGCTTG CTCCCGTGTC GCCGTTGGCG CTGGCGCAGC CGGCGTCTGT TCCCGCTGCG CCGGCCGGCG CGGCGGCGGC GGAGCAGGTG CAGAGCAACC TGAACCGCAG CGTGCAGATC GGCCGCCAGT CGCCGTATCT GCAGAAAGAC GCGACGATCA TCGATGCGCC GACCTACGAG TTGCCTGACA TGGGCGATCC GTCCACGGCG GCGCTGTCGC CGGAGATGGA GCGCCGTCTG GGCGACCGCG TGATGCGGCA GATCCGGCGC GACCCGGATT ATGTGCCGGA TCCGCTGCTG TCGGACTACC TGAACGATAT CGGCTACCGG CTGATCGAGG CGGCGCGACG GCAGCATGTG GCGGGCAGTA CGTCGGCGTC GAGCTTCGAG CTGTTCGCGG TGCGCGATCC GGGCATCAAC GCGTTTGCGC TGCCGGGCGG GTATATCGGC GTCAACACGG GCACGCTGGT GGCGACGGAG AGCGAATCGG AGCTGGCCTC GGTGCTCGGC CACGAGATCG GCCACGTGCT GCAGCGGCAC ATCGCGCGCG GCATCGACAA GTCGGGCGAG TCGATGTGGA TTGCGCTGGC GTCGATCCTG CTGGCGGGGC TGGCGGCCAC CAAGAGCGGC GACGCGGCGC AGGCGCTGGC GGTGGGCGGG CAGGCGGCGG CGGTGTCGAA CCAGCTGGCG TTTTCGCGCG GCGCGGAGCG CGAGGCCGAC CGCGTCGGCT TTACGCTGCT GACCGGCGCC GGCTACAACC CCGACGGCAT GCCCGATTTC TTCCGACGGC TGCAGCGCGT GAGCAGCATC GCGGACACCG GCGCCGTTCC CGGCTACGCG CGCACCCACC CGCTGACCGG CGAGCGCATC GCCGACATGG AAGACCGCGC GCGCGGCCTG CCGCACCCGC GCCAGCCGCA GCGGCCGGCG TTCGGCTTTG CCAAGGCGCG TGCGCGCGTG CTGCAGGAGA CCTCGACCAG CGCCTATCTC GACGTGCGCA ATGCGATGCG CTCGCAGCTG GCCTCCGCGC CGGATGCGCC GGCCGAGAAA CGCGCGGCGC TGTGGTACGG CATCGCCGTC GCCGAGCAAC TGGCCGGGCA GCTGGACCCC GCGGAGCAGG CGCTGCTCGA AGCGCGGCGG CTGTACGGCA ACATCCCCGG CCTCACCTCG GGCAGTCCGA GCCTGGATGT GACTGCCATC GAACTGGCCC GTGCCCGCAA TCGCGTGCCG GAGGCGCTGA CGATGGCACG GGCCGCGCTG GCGGCGTATC CGCTGTCGCG TGCGGTCGGC ATTACCTATG CGCAGACGCT GCTGGCGGCG GGCCGCGCGG GCGATGCGAT TCCCTATCTG CAGGACAAGG CGCGCGAGGA CACCGCACAG CCGATCTGGT GGGACATGCT GGCCCGCGCC TATGCGGACC AGGGCAAGCG CGTCGAGCAG CATCGCGCGC TGGCCGAGAA GTACGCGCGC GACGGTGCCT GGGGCGCGGC AGTGGAGCAG CTCAAGCTCG CGCGCGACGC GGGCGATGCG GATTTCTATA CGCTGTCCGA GGTCGATGCG CGGCTGCACC AGATGGAGCG CCAGTACCGC GAAGAGAAGC AGGAAGAGAA GGCGCTGCCG AAGTAG
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Protein sequence | MTLSFFRPRA RKVTAAVLLM TWLAPVSPLA LAQPASVPAA PAGAAAAEQV QSNLNRSVQI GRQSPYLQKD ATIIDAPTYE LPDMGDPSTA ALSPEMERRL GDRVMRQIRR DPDYVPDPLL SDYLNDIGYR LIEAARRQHV AGSTSASSFE LFAVRDPGIN AFALPGGYIG VNTGTLVATE SESELASVLG HEIGHVLQRH IARGIDKSGE SMWIALASIL LAGLAATKSG DAAQALAVGG QAAAVSNQLA FSRGAEREAD RVGFTLLTGA GYNPDGMPDF FRRLQRVSSI ADTGAVPGYA RTHPLTGERI ADMEDRARGL PHPRQPQRPA FGFAKARARV LQETSTSAYL DVRNAMRSQL ASAPDAPAEK RAALWYGIAV AEQLAGQLDP AEQALLEARR LYGNIPGLTS GSPSLDVTAI ELARARNRVP EALTMARAAL AAYPLSRAVG ITYAQTLLAA GRAGDAIPYL QDKAREDTAQ PIWWDMLARA YADQGKRVEQ HRALAEKYAR DGAWGAAVEQ LKLARDAGDA DFYTLSEVDA RLHQMERQYR EEKQEEKALP K
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