Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0557 |
Symbol | pilA1 |
ID | 1219362 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 601951 |
End bp | 602472 |
Gene Length | 522 bp |
Protein Length | 173 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637236916 |
Product | type 4 fimbrial pilin signal peptide protein |
Protein accession | NP_518678 |
Protein GI | 17545276 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCATCGA AGCACAGCAG GAACAGGCGG CGCGGCCAGC GCGGCTTTAC ATTGATCGAG TTGATGATCG TGGTGGCGAT CATTGGGATA TTGGCGGCGC TGGCGATTCC GGCGTATCAG GACTACACGA TCCGGTCGCG TGTGGTCGAG GGGCTGGCAC TGGCAGGGCA AGCCAAGGCG CTGGTGGTTG AAAATGCCGC CAACGCACAG AGTAGCCTGT CACTCGGTTC CGCATCGTTG CCGGCCAGCA AGAACGTCAG TGCGCTGAAT ATTGATTCGT CCACCGGCGA AATCGCAGTG GTCTATGCAC CCGCTGTTAC GGAAGCGGGG GCGAATACGT TGGTATTGAC CCCATACTCC GGCAGTTCGT CAGTATTTGG CAATTTGCAG GCAGGTTCAA CGCCGCCGGC AATGGTGCTG TGGGTGTGTG CCGCCGCCGG CAAGTCGATG CCGGTCAATA CCGTTACCCA GAGGACGACG GCTACGTTGC CACCGAAATA CGCGCCCTCG GAGTGCCGTT GA
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Protein sequence | MASKHSRNRR RGQRGFTLIE LMIVVAIIGI LAALAIPAYQ DYTIRSRVVE GLALAGQAKA LVVENAANAQ SSLSLGSASL PASKNVSALN IDSSTGEIAV VYAPAVTEAG ANTLVLTPYS GSSSVFGNLQ AGSTPPAMVL WVCAAAGKSM PVNTVTQRTT ATLPPKYAPS ECR
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