Gene RSc0557 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0557 
SymbolpilA1 
ID1219362 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp601951 
End bp602472 
Gene Length522 bp 
Protein Length173 aa 
Translation table11 
GC content60% 
IMG OID637236916 
Producttype 4 fimbrial pilin signal peptide protein 
Protein accessionNP_518678 
Protein GI17545276 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4969] Tfp pilus assembly protein, major pilin PilA 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATCGA AGCACAGCAG GAACAGGCGG CGCGGCCAGC GCGGCTTTAC ATTGATCGAG 
TTGATGATCG TGGTGGCGAT CATTGGGATA TTGGCGGCGC TGGCGATTCC GGCGTATCAG
GACTACACGA TCCGGTCGCG TGTGGTCGAG GGGCTGGCAC TGGCAGGGCA AGCCAAGGCG
CTGGTGGTTG AAAATGCCGC CAACGCACAG AGTAGCCTGT CACTCGGTTC CGCATCGTTG
CCGGCCAGCA AGAACGTCAG TGCGCTGAAT ATTGATTCGT CCACCGGCGA AATCGCAGTG
GTCTATGCAC CCGCTGTTAC GGAAGCGGGG GCGAATACGT TGGTATTGAC CCCATACTCC
GGCAGTTCGT CAGTATTTGG CAATTTGCAG GCAGGTTCAA CGCCGCCGGC AATGGTGCTG
TGGGTGTGTG CCGCCGCCGG CAAGTCGATG CCGGTCAATA CCGTTACCCA GAGGACGACG
GCTACGTTGC CACCGAAATA CGCGCCCTCG GAGTGCCGTT GA
 
Protein sequence
MASKHSRNRR RGQRGFTLIE LMIVVAIIGI LAALAIPAYQ DYTIRSRVVE GLALAGQAKA 
LVVENAANAQ SSLSLGSASL PASKNVSALN IDSSTGEIAV VYAPAVTEAG ANTLVLTPYS
GSSSVFGNLQ AGSTPPAMVL WVCAAAGKSM PVNTVTQRTT ATLPPKYAPS ECR