| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0515 |
|---|
| Symbol | |
|---|
| ID | 1219319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 551121 |
|---|
| End bp | 553556 |
|---|
| Gene Length | 2436 bp |
|---|
| Protein Length | 811 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637236873 |
|---|
| Product | organic solvent tolerance transmembrane protein |
|---|
| Protein accession | NP_518636 |
|---|
| Protein GI | 17545234 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1452] Organic solvent tolerance protein OstA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.877133 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.048519 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAC CGAACCGAGC CAGGAAAACC CGGCAGCGCA CCGCTTTTGC TGCGCCCGAT
CAGCGGACCG CACCCCGTCG TGGCGCGCTG GCGCTGCGGC CGCTGGTGTT CGCGGTGGCC
GGGGTCTGGA CGGCGGCATC CGCGGCGCAG AGTCAGGGCG CCACGCAGCA GGCGGCGTCC
GCGCAGGCAC CCTCGTCGGC CGCTTCCGTG ACGGCCCTGG CGGTGTCGGG CCCGACCACG
CCGGGCGGCG CACCGCTGGT GCCCAAGATG GCCGAGCCCG TCAAGCGCCC GGACAACGCC
GTGCCCTCGT TTGCCGCCGC CGATGCCATG GACGGCCGCA CCAATGAGGA CATCCACCTG
CGCGGCCACG GCGAGCTGCG CCGCAACGGC ACCGTGGTCA AGGGCGACAC GCTGGACTAC
AACCAGGACA CCGATTTCGC CACCGCCACC GGCAACGTGC GCCTGTTCCG CGACGGCACG
CTCGTCACCG GCCCGGACGC CGCGCTCAAG GTGACCGCCA ACGAGGGCAC CATGCACACG
CCCTCGTACG AATTCCACAC CGTGGGCGGC CGCGGCAGCG CCGAGCGCAT CGATTTCATC
GACAAGGACA ACAGCCGCAT CACCAAGGGC ACGTACACCA CGTGTTCGCC GGACAACGTC
GACTGGTACT TCAGCGCCAG CCAGATCGAC ATCGACAGCG ACCGCCAGGT CGGCTCCGGC
CGCGCTGGTG TGCTGCACTT CCTGGGCATG CCGGTGTTCG CCTCGCCGGT GTTCGATTTC
CCGCTCAACG ATGAGCGCCG CAGCGGCTTT CTCGCGCCGG TGTTCGGCTA CAGCAGCCGC
AGCGGCGCCG ACGTGACGCT GCCGTACTAC TTCAACATCG CGCCCAACCG GGACCTGACG
CTGTATCCGC GTCTGCTCTC GCAGCGCGGC CTGCAGTTGG GCGCCGAGTA TCGCTACCTG
AGCCAGACCT ACAACGGCGT GCTGCGCGGC GAATTCCTGC CCAATGATCG CGAGGCCGAC
CGCAACCGCT GGTCGATCGC GCTGGTGCAC AACCAGCGTC TGGCGACCGG CCTGAACGCC
TACGTCAACT ACAACAAGGT CTCCGACAGC ACCTACCCGG ACGACCTCGG CCGCAGCATC
GTCACGGCGA CGCAGCGCCA GTACACGCAG GAAGGCGGCG TCACGTATTC CATCGGCGAC
TGGGTGGCCC TGGCGCGGGT GCAGAAGTTC CAGACGCTGT CGACCGCGAC CACGGCGCTG
TCGCCGCCGT ACGAGCGCGT GCCGCAGCTG AACCTGTCGT ACAACCGGTA CGATGTCGGC
GGCTTCGACA TCAACTTCCA GACCGACTAC ACCAAGTTCA GCATCCCGAC CGAGAACACG
GTCCAGGGCG AGCGCCTGTT CATGCAGCCG ACGATCAGCT ATCCGATCAT CCGGCCGGGC
TGGTTCGTCA CGCCCAAGTT CATCCTGAAC ACGACGTCGT ACCGCCTGGA CCGCCCGACG
GGCGACACGC AGGCTTCGCA GATCAACCGC ACGCTGCCGA CCGTCTCGCT CGATTCGGGG
CTGACCTTCG AGCGCGATAC GCCGCTGGTG TCGAAGTGGT TCGGCCGCAG CTACATCCAG
ACGCTGGAGC CGCGGCTGTT CTACGTCTAC ACGCCGTTCC GCGACCAGTC GCAGATCCCG
CTGTTCGATA CGGCGCAGTC GGACTACAAC CTCGGCCAGA TCTTCACCGA GAACCCGTAC
ACCGGCTACG ACCGCATCGC CGACAACAAC AAGCTGACGG CCGGCGTGAC CACCCGCTTC
ATCGAGTCCG AGACGGGCAT CGAGCGCCTG CGCGCCACGC TGGCCCAGCG CCTGGACTTC
GAGGGCCAGC GCGTGACCCT GGCCGGCTCG GCGCCCACCT CGGTGCGCCG CTATTCGGAC
CTGTTGGGCG CGACCACCAT CCAGATGTTC CGCGGTATCT TTTTCGATAC CAACCTTCAG
TACAATCAGG ACATCGACCG CATCATGCGC TCGACGATGG CGTTCAGCTG GAAGCCGGAT
GCCAACAAGG TGATCAACCT CGGCTACCGT TACTACCGCG CCGATGCCAA CACCGGGCAG
CTGGCGCTGG AGCAGACCGA CATCTCGGCG CAGTGGCCGC TGACGCGCCG CCTATATGGC
CTGGGGCGCA TCGGCTACGA CATGGATGCC AAGAAGCCGT CGGACATGCT GCTGGGCTTC
GAATATGTCG CCGACTGCTG GGTCGGGCGG CTGGCGGTGC AGCGCTACAG CAACGCGACC
TCGGGCTATA CGACGCACAT CTTTGCCCAG ATCGAGTTCA AGGGGCTGTC GAAGGTGGGG
AACAATCCGA TCGACGTGAT CCGACTCAAC GTGCCCGGCT ACCAGCCGGT CACCGCGCAG
CCGGTCACGC CGTCCGTGCT GGATCAATAC GAATGA
|
|---|
| Protein sequence | MTEPNRARKT RQRTAFAAPD QRTAPRRGAL ALRPLVFAVA GVWTAASAAQ SQGATQQAAS
AQAPSSAASV TALAVSGPTT PGGAPLVPKM AEPVKRPDNA VPSFAAADAM DGRTNEDIHL
RGHGELRRNG TVVKGDTLDY NQDTDFATAT GNVRLFRDGT LVTGPDAALK VTANEGTMHT
PSYEFHTVGG RGSAERIDFI DKDNSRITKG TYTTCSPDNV DWYFSASQID IDSDRQVGSG
RAGVLHFLGM PVFASPVFDF PLNDERRSGF LAPVFGYSSR SGADVTLPYY FNIAPNRDLT
LYPRLLSQRG LQLGAEYRYL SQTYNGVLRG EFLPNDREAD RNRWSIALVH NQRLATGLNA
YVNYNKVSDS TYPDDLGRSI VTATQRQYTQ EGGVTYSIGD WVALARVQKF QTLSTATTAL
SPPYERVPQL NLSYNRYDVG GFDINFQTDY TKFSIPTENT VQGERLFMQP TISYPIIRPG
WFVTPKFILN TTSYRLDRPT GDTQASQINR TLPTVSLDSG LTFERDTPLV SKWFGRSYIQ
TLEPRLFYVY TPFRDQSQIP LFDTAQSDYN LGQIFTENPY TGYDRIADNN KLTAGVTTRF
IESETGIERL RATLAQRLDF EGQRVTLAGS APTSVRRYSD LLGATTIQMF RGIFFDTNLQ
YNQDIDRIMR STMAFSWKPD ANKVINLGYR YYRADANTGQ LALEQTDISA QWPLTRRLYG
LGRIGYDMDA KKPSDMLLGF EYVADCWVGR LAVQRYSNAT SGYTTHIFAQ IEFKGLSKVG
NNPIDVIRLN VPGYQPVTAQ PVTPSVLDQY E
|
|---|
| |