Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0466 |
Symbol | aspS |
ID | 1219270 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 497213 |
End bp | 499030 |
Gene Length | 1818 bp |
Protein Length | 605 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637236824 |
Product | aspartyl-tRNA synthetase |
Protein accession | NP_518587 |
Protein GI | 17545185 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0173] Aspartyl-tRNA synthetase |
TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGTACTC AATATTGCGG TCAGGTCACC GAACAACTGC TGGGCCAGAG CGTCACCCTG TCGGGCTGGG CGCATCGCCG GCGTGACCAC GGCGGCGTGA TCTTCATCGA CCTGCGCGAT CGCGAGGGCC TGGTGCAGGT GGTGTGCGAT CCGGACCGTC CGGAGATGTT CAAGGTGGCC GAAGGCGTGC GCAACGAGTT CTGCCTGCAG GTCAAGGGCA TCGTGCGTGC GCGTCCGGAA GGCACGACCA ACCCGAACCT AGCCAGCGGC AAGATCGAGG TGCTGTGCCA TGAGCTGACG GTGCTCAACG CCTCCGTCAC GCCGCCGTTC CAGCTCGACG ACGACAACCT GTCGGAAACC ACGCGCCTGA CGCACCGCGT GCTGGACCTG CGCCGCCCGC AGATGCAATA CAACCTGCGC CTGCGCTACA AGGTGGCGAT GGAAGTGCGC AAGTACCTGG ACGACAAGGG CTTCATCGAC ATCGAAACGC CGATGCTGAC CAAGAGCACG CCGGAAGGCG CGCGCGACTA CCTGGTGCCG TCGCGCGTGA ACGCCGGCCA GTTCTTCGCG CTGCCGCAGT CGCCGCAGCT GTTCAAGCAG ATGCTGATGG TGTCGGGCTT CGACCGCTAC TACCAGATCA CCAAGTGCTT CCGCGACGAA GACCTGCGCG CTGACCGCCA GCCCGAATTC ACCCAGATCG ACTGCGAAAC GTCGTTCCTG AGCGAGCAGG AAATCCGCGA TCTGTTTGAA GAAATGATCC GCACGGTGTT CCAGAACACC ATGTCGGTCG CGCTGGATGC CAAGTTCCCG GTGATGGAGT TCCGCGAGGC GATGGCCCGC TTCGGTTCGG ACAAGCCGGA CCTGCGCGTG AAGCTGGAGT TCACCGAGCT GACCGACGCC ATGAAAGACG TCGACTTCAA GGTGTTCTCC GGCCCGGCCA ACGCCGAAGG CGGCCGCGTG GTGGCGCTGC GTGTGCCGGG CGGTGCTGCC CTGTCGCGTG GTGACATCGA CGCCTACACC AAGTTCGTCG AGATCTACGG CGCCAAGGGC CTGGCCTGGA TCAAGGTCAA CGAAGTGGCC AAGGGCCGCG ACGGCCTGCA ATCGCCGATC GTGAAGAACC TGCACGACGC GGCCATCGCC GAGATCCTCA AGCGTAGCGG CGCGCAAGAC GGCGACATCC TGTTCTTCGG CGCCGACCGC GCCAAGGTCG TCAACGACGC CATGGGCGCG CTGCGCCTGA AGGTGGGCCA TTCGGACTTC GCCAAGAGCA CCGGCCTGTT CGAAGACGCC TGGAAGCCGC TGTGGGTGGT CGACTTCCCG ATGTTCGAGT ACGACGAGGA AGACGCGCGC TGGGTGGCCA TGCACCACCC GTTCACGAGT CCGAAGGACG AGCACCTGGA ATACCTGGAA ACCGATCCGG GCAAGTGCAT CGCCAAGGCC TACGACATGG TGCTCAACGG CTGGGAAATC GGTGGCGGCT CGGTGCGGAT CTACCGCGAA GAAGTGCAGA GCAAGGTGTT CCGCGCCCTG AAGATCGGTG ATGAAGAAGC GCGTGCCAAG TTCGGCTTCC TGCTGGACGC CCTGCAGTAT GGCGCGCCCC CGCACGGCGG CATTGCGTTC GGCCTGGACC GCGTTGTCAC GATGATGGCC GGCGCCGACT CGATCCGCGA CGTGATCGCC TTCCCGAAGA CGCAGCGTGC GCAGGATCTG CTCACGCAGG CGCCGAGCCC GGTCGACGAG AAGCAGCTGC GCGAACTGCA CATCCGCCTG CGCGCGGCGG AGGCCAAGGT CGCCGCGCCG GCGGCGGCCA CGGCCTGA
|
Protein sequence | MRTQYCGQVT EQLLGQSVTL SGWAHRRRDH GGVIFIDLRD REGLVQVVCD PDRPEMFKVA EGVRNEFCLQ VKGIVRARPE GTTNPNLASG KIEVLCHELT VLNASVTPPF QLDDDNLSET TRLTHRVLDL RRPQMQYNLR LRYKVAMEVR KYLDDKGFID IETPMLTKST PEGARDYLVP SRVNAGQFFA LPQSPQLFKQ MLMVSGFDRY YQITKCFRDE DLRADRQPEF TQIDCETSFL SEQEIRDLFE EMIRTVFQNT MSVALDAKFP VMEFREAMAR FGSDKPDLRV KLEFTELTDA MKDVDFKVFS GPANAEGGRV VALRVPGGAA LSRGDIDAYT KFVEIYGAKG LAWIKVNEVA KGRDGLQSPI VKNLHDAAIA EILKRSGAQD GDILFFGADR AKVVNDAMGA LRLKVGHSDF AKSTGLFEDA WKPLWVVDFP MFEYDEEDAR WVAMHHPFTS PKDEHLEYLE TDPGKCIAKA YDMVLNGWEI GGGSVRIYRE EVQSKVFRAL KIGDEEARAK FGFLLDALQY GAPPHGGIAF GLDRVVTMMA GADSIRDVIA FPKTQRAQDL LTQAPSPVDE KQLRELHIRL RAAEAKVAAP AAATA
|
| |