| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0452 |
|---|
| Symbol | |
|---|
| ID | 1219256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 480161 |
|---|
| End bp | 481408 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637236810 |
|---|
| Product | putative transmembrane protein |
|---|
| Protein accession | NP_518573 |
|---|
| Protein GI | 17545171 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2715] Uncharacterized membrane protein, required for spore maturation in B.subtilis. |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.75608 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCCTCA ACCTCGTCTG GCTCGCCTTC TTCCTCGTCG CCTTCGTCAC CGCCTGCGTG
CAGGTGGCGA TGGGCGACAT GGAGATCTTC GCCCGCATGC TCACCGGCAT GTTCGACGCC
GCGCGCACCG GCTTCGAGAT CGCGCTCGGG CTGACCGGCA TGATGGCGCT GTGGCTGGGC
ATCATGCGCG TCGGCGAGCG GGCAGGGGTG GTGGACCTGT TCGCCCGCCT GGTGAACCCG
CTGATGCGCC ACCTGTTCCC ATCGGTGCCG CCGGGCCACG CGGCCAACGG GGCGATGATG
ATGAACGTCT CGGCCAACGT GCTGGGCCTG GACAATGCCG CCACGCCGCT CGGCCTGCAG
GCCATGCGTG AGCTGCAGTC GATCAACCCG CAGCCGCGCC GCGCCAGCGA CGCGCAGCTG
ATGTTCGTCG TGCTCAACAC CGCCGGCGTG ACGCTGGTGC CCACCTCCGT GATCGCCATC
CGGCAGGCGC TGGCGGTCAA GCAGGGGCTG GCCGGCTTCA ACGCGGCCGA CATCTTCCTG
CCGACGCTGC TGTCCACCTT CGTCGGCTTC TGCGCGGGCA TCGCCGCGGT GGCCTGGCAT
CAGCGCATCA ACCTGTTTCG GCCGGCGCTG CTGGCGTACT TCGGCGGCTT CGTCGCGGCG
ATGGGGCTGC TGTTCGCGTG GCTGCGCCAG TTTCCGCCCC AGCAGATGGC GGCGTGGATC
GGCCTGATCG GCGCGGGGGC CATCCTCACG ATCGTGGTGG CGTTCCTGGC GTGCGGGGCG
CTGCGGCGGA TCAATGTCTA CGAGACCTTC GTCGACGGCG CCAAGGACGG CTTCCAAGTG
GCGATCGGCA TCGTGCCGTA CCTGGTGGCG GTGCTGGTCG GCATCGCGGT GTTCCGCGCG
GCGGGCTGCA TGGAGTTCCT GATGCAGGGG CTGTCGGCGG CGTTCAGCCA CCTGGGCATC
GATACGCGCT TCGTGCCGGC GCTGCCCGTG GGCCTGATGA AAACGCTGTC CGGCGCCGGT
GCACGCGGCC TGATGGTGGA CGTGATGACC ACCTACGGCG TCGACTCCTT CCAGGGCAAG
CTGGCCGCCA TCATCCAGGG CTCGACCGAG ACCACGTTCT ACGTGCTGGC CGTGTATTTC
GGCAGCGTGG GCATCAAGGA CACGCGCTAC GCGCTCGCCT GCGGGCTGTG GGCCGACCTG
ATCGGCCTGG TCGGCGCGGT GCTGATCGCC TACCTGTTCT TCGGCTGA
|
|---|
| Protein sequence | MALNLVWLAF FLVAFVTACV QVAMGDMEIF ARMLTGMFDA ARTGFEIALG LTGMMALWLG
IMRVGERAGV VDLFARLVNP LMRHLFPSVP PGHAANGAMM MNVSANVLGL DNAATPLGLQ
AMRELQSINP QPRRASDAQL MFVVLNTAGV TLVPTSVIAI RQALAVKQGL AGFNAADIFL
PTLLSTFVGF CAGIAAVAWH QRINLFRPAL LAYFGGFVAA MGLLFAWLRQ FPPQQMAAWI
GLIGAGAILT IVVAFLACGA LRRINVYETF VDGAKDGFQV AIGIVPYLVA VLVGIAVFRA
AGCMEFLMQG LSAAFSHLGI DTRFVPALPV GLMKTLSGAG ARGLMVDVMT TYGVDSFQGK
LAAIIQGSTE TTFYVLAVYF GSVGIKDTRY ALACGLWADL IGLVGAVLIA YLFFG
|
|---|
| |