Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0421 |
Symbol | |
ID | 1219225 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | + |
Start bp | 449389 |
End bp | 450552 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637236779 |
Product | putative multidrug-efflux transporter transmembrane protein |
Protein accession | NP_518542 |
Protein GI | 17545140 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.107977 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.376208 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGGTT TCGAGTTGCG CGCCGCCACT TCGCTGGCCG GCATCTTCGC GCTGCGCATG CTGGGCCTGT TCATGATCAT GCCGGTGTTC GCCGTGTTCG CGAAGTCGCT GCCGGACGGC GGCAACACCC AGCTGGTCGC TTTCGCCATC GGCGTGTACG GCCTCACGCA AGCCGTGCTC TACATCCCCT ACGGCTGGCT GTCGGACCGC TTCGGGCGCA AGCCGGTCAT CGTGGCGGGG CTGCTGATCT TTGCCGCGGG CAGCTTGGTG GCGGCGTTCT CGCACAGCGT GGCGGGCATC GCGGTGGGCC GGGCCATCCA GGGCGCCGGC GCGATCTCGT CCGCGGTGAT CGCCTTCGTG GCCGACCTGA CGCGCGAGGA GCACCGCACC AAGGCGATGG CGATGATCGG CGGCAGCATC GGCGTGTCGT TCGCCGTGGC CATTGTCAGC GCGCCGGTCA TCTTCCGCTG GATCGGCATG CCGGGCATGT TCCTGGCCAT CGGCATCCTG GCGCTGATCG CCATCGGCGT GGTGCTGTGG GTCGTGCCGG ATGCGCCGCG CCCGGCGGCG CACGTGAGCG CGCCGTTCCG CGAGGTGCTG CACAACCGCG AGCTGCTGCG CCTGAACTTC GGCGTGTTCG CGCTGCATGC CACGCAGACG GCGCTGTTCG TCGTGCTGCC GCACATGCTG GAGACCGCCG GCCTGCCGGT CGATTCGCAC TGGAAGATCT ACCTGCCGGT GATGGGCGTG TCGTTCGTGC TGATGGTGCC GGCCATCATC GCCGCGGAGA AGCGCGGCAA GATGAAGGCG GTGCTGCTGT CGGCCGTCGC GCTGGTGATG GTGGCGCAGC TGGCGCTGGG CGAGGCGCAG CCGACGTTGG CCTCGCTGAC GGTCGCGCTG CTGGTGTACT TCCTCGGCTT CAACGTGCTG GAGGCCTCGC AGCCGTCGCT GGTCTCGAAA TATGCGCCGG GCGTGCGCAA GGGCGCCGCG ATGGGCGTCT ACAACACGAC GCAGGCGCTC GGGCTGTTCA CGGGCGGGGC CGGCGGCGGC TGGATTCTGC TGCATGCCGG GCAGCATGCG GTGTTCTTCA CCTGCGCTGG CCTGGCGGCA GCCTGGCTTA TAATCGCCAG TCCCATGCGG ATGCCGGCGC TGCGTCGTCA CTAA
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Protein sequence | MTGFELRAAT SLAGIFALRM LGLFMIMPVF AVFAKSLPDG GNTQLVAFAI GVYGLTQAVL YIPYGWLSDR FGRKPVIVAG LLIFAAGSLV AAFSHSVAGI AVGRAIQGAG AISSAVIAFV ADLTREEHRT KAMAMIGGSI GVSFAVAIVS APVIFRWIGM PGMFLAIGIL ALIAIGVVLW VVPDAPRPAA HVSAPFREVL HNRELLRLNF GVFALHATQT ALFVVLPHML ETAGLPVDSH WKIYLPVMGV SFVLMVPAII AAEKRGKMKA VLLSAVALVM VAQLALGEAQ PTLASLTVAL LVYFLGFNVL EASQPSLVSK YAPGVRKGAA MGVYNTTQAL GLFTGGAGGG WILLHAGQHA VFFTCAGLAA AWLIIASPMR MPALRRH
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