Gene RSc0421 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc0421 
Symbol 
ID1219225 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp449389 
End bp450552 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content69% 
IMG OID637236779 
Productputative multidrug-efflux transporter transmembrane protein 
Protein accessionNP_518542 
Protein GI17545140 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.107977 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.376208 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGGTT TCGAGTTGCG CGCCGCCACT TCGCTGGCCG GCATCTTCGC GCTGCGCATG 
CTGGGCCTGT TCATGATCAT GCCGGTGTTC GCCGTGTTCG CGAAGTCGCT GCCGGACGGC
GGCAACACCC AGCTGGTCGC TTTCGCCATC GGCGTGTACG GCCTCACGCA AGCCGTGCTC
TACATCCCCT ACGGCTGGCT GTCGGACCGC TTCGGGCGCA AGCCGGTCAT CGTGGCGGGG
CTGCTGATCT TTGCCGCGGG CAGCTTGGTG GCGGCGTTCT CGCACAGCGT GGCGGGCATC
GCGGTGGGCC GGGCCATCCA GGGCGCCGGC GCGATCTCGT CCGCGGTGAT CGCCTTCGTG
GCCGACCTGA CGCGCGAGGA GCACCGCACC AAGGCGATGG CGATGATCGG CGGCAGCATC
GGCGTGTCGT TCGCCGTGGC CATTGTCAGC GCGCCGGTCA TCTTCCGCTG GATCGGCATG
CCGGGCATGT TCCTGGCCAT CGGCATCCTG GCGCTGATCG CCATCGGCGT GGTGCTGTGG
GTCGTGCCGG ATGCGCCGCG CCCGGCGGCG CACGTGAGCG CGCCGTTCCG CGAGGTGCTG
CACAACCGCG AGCTGCTGCG CCTGAACTTC GGCGTGTTCG CGCTGCATGC CACGCAGACG
GCGCTGTTCG TCGTGCTGCC GCACATGCTG GAGACCGCCG GCCTGCCGGT CGATTCGCAC
TGGAAGATCT ACCTGCCGGT GATGGGCGTG TCGTTCGTGC TGATGGTGCC GGCCATCATC
GCCGCGGAGA AGCGCGGCAA GATGAAGGCG GTGCTGCTGT CGGCCGTCGC GCTGGTGATG
GTGGCGCAGC TGGCGCTGGG CGAGGCGCAG CCGACGTTGG CCTCGCTGAC GGTCGCGCTG
CTGGTGTACT TCCTCGGCTT CAACGTGCTG GAGGCCTCGC AGCCGTCGCT GGTCTCGAAA
TATGCGCCGG GCGTGCGCAA GGGCGCCGCG ATGGGCGTCT ACAACACGAC GCAGGCGCTC
GGGCTGTTCA CGGGCGGGGC CGGCGGCGGC TGGATTCTGC TGCATGCCGG GCAGCATGCG
GTGTTCTTCA CCTGCGCTGG CCTGGCGGCA GCCTGGCTTA TAATCGCCAG TCCCATGCGG
ATGCCGGCGC TGCGTCGTCA CTAA
 
Protein sequence
MTGFELRAAT SLAGIFALRM LGLFMIMPVF AVFAKSLPDG GNTQLVAFAI GVYGLTQAVL 
YIPYGWLSDR FGRKPVIVAG LLIFAAGSLV AAFSHSVAGI AVGRAIQGAG AISSAVIAFV
ADLTREEHRT KAMAMIGGSI GVSFAVAIVS APVIFRWIGM PGMFLAIGIL ALIAIGVVLW
VVPDAPRPAA HVSAPFREVL HNRELLRLNF GVFALHATQT ALFVVLPHML ETAGLPVDSH
WKIYLPVMGV SFVLMVPAII AAEKRGKMKA VLLSAVALVM VAQLALGEAQ PTLASLTVAL
LVYFLGFNVL EASQPSLVSK YAPGVRKGAA MGVYNTTQAL GLFTGGAGGG WILLHAGQHA
VFFTCAGLAA AWLIIASPMR MPALRRH