| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0383 |
|---|
| Symbol | |
|---|
| ID | 1219186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 411937 |
|---|
| End bp | 412638 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637236740 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_518504 |
|---|
| Protein GI | 17545102 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.588829 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATT TCGTCGTCAC CCCGCCGGCC GTCACCGGCA TTCCCGTCCG CGGCGCAGCC
GGCGAGTTTC CGGTGCGCCG CGTCTACTGC GTGGGCCGCA ACTACGCCGC CCATGCGCGG
GAAATGGGCT CCGACCCGGA TCGCGAACCG CCGTTCTTCT TCTGCAAGCC GGCCGATGCC
GTGCGCTACG TCGCCGACGG CACCACCGGC CAGTTCGTCT ATCCGACCGA GACCCGCGAT
TGCCACTACG AGATCGAGCT GGTCGTCGCC ATCGGCACCG GCGGGCGCGA CATCGCGGTG
GAGTCGGCCG CCCAGCACAT CTACGGCTAC GCCATCGGCC TGGACATGAC CCGCCGCGAC
CTGCAGAACG CCGCCAAGAA GGGCGGCCGC CCGTGGGAGA CCGGCAAGGC CTTCGACGGC
TCCGCCCCGA TCGGCCCGAT CGTGCCGGCC CAGACGGTGG CCAGCCCCGA CCGCGGCGCC
ATCACGCTGT CGGTCAACGA CAAGGCGCAT CAGCACGGCG ACCTGTCCGA TCTGATCTGG
TCGGTGCCGG AGACCATCGC CTACCTGTCC CGCCTGTTCG AGCTGCGCCC CGGCGACCTG
ATCTTCACCG GCACGCCCGA GGGCGTCGGC CCGGTCTCGA TCGGCGACCT GATGGTCGGC
CGGATCGACG GCGTGGGCGA GCTGCACGTG AAGGTGGTGT GA
|
|---|
| Protein sequence | MTDFVVTPPA VTGIPVRGAA GEFPVRRVYC VGRNYAAHAR EMGSDPDREP PFFFCKPADA
VRYVADGTTG QFVYPTETRD CHYEIELVVA IGTGGRDIAV ESAAQHIYGY AIGLDMTRRD
LQNAAKKGGR PWETGKAFDG SAPIGPIVPA QTVASPDRGA ITLSVNDKAH QHGDLSDLIW
SVPETIAYLS RLFELRPGDL IFTGTPEGVG PVSIGDLMVG RIDGVGELHV KVV
|
|---|
| |