| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0229 |
|---|
| Symbol | |
|---|
| ID | 1219032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 250678 |
|---|
| End bp | 251886 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637236586 |
|---|
| Product | putative AMINNO transferase protein |
|---|
| Protein accession | NP_518350 |
|---|
| Protein GI | 17544948 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCC TGCAATCGTT GCTCGCCCCC CGCCTGCAAA ACGTCGAGAC TTCGGCCATC
CGCGAACTCT TCAAGGTGCT CGGCAAGCCG GGCCTGATTT CGTTTGCCGG CGGCTTTCCG
GATGCGGCGC TGTTCGACGT CGAGGGCCTG AAGGCCGCCG CCGACAGCGC GCTCGCCACC
GACGCGGCGC GCGCGCTGCA ATACGGCGCC ACCGAGGGGT TCGAGCCGCT GCGCGAAGCC
ATCGTCACGC TGATGCAGGC GCGCGGCGCC ACGGTGGCCA ACACCGACAT CCTCGTCACC
ACCGGCTCGC AGCAGGGGCT GGACCTGCTG GGCAAGGTGC TGATCGGCGA AGGCGACACG
GTGCTGACCG AGGCCCCGAC CTTCCTCGCC GCCATCCAGG CCTTCAAGCT GTATGGCGCC
AAGGTGGCCG GCGTGCCGAC CGATGAAGAC GGCCTGGACC TCGATGCGCT GGAGCGCGCG
CTCGCCGCCG GCCGCCCCAA GTTCCTCTAC GTGATCCCCA ACTTCGGCAA CCCGAGCGGC
GCGCTGATGA GCCTGGAGCG CCGCCGGCGC CTGCTGGCGC TGGCCGTGCG CCATGACCTG
CTGATCGTCG AGGACGACCC GTATGGCGAG CTGTACTTCG ACGCGCCGCC GCCGCCTTCG
CTGTTCGCGC TCAGCCAGCA GACCGACGGC GCGCAGGGCC GCGTGGTCTA CCTGGGCAGC
CTGTCCAAGG TGGTGGCGCC GGGCCTGCGG GTGGGCTGGA TGATCGCGCC GTCGCTGGTG
CTGTCCAACG CGGTGATGGT CAAGCAGTTT GCCGACGCGC ACACCTCCAC CTTCGCGCAG
GCCACCGCCG CCGCCTACCT GCGCAGCCAG CGCATGGAGA CCGTGCTGCC GCGCACGCGC
GCCGCCTATG CCGAGCGCGC CCACGCCATG GCCGACGGCC TGCGCGCGCT GCTGCCCGAG
GCCGAACTGA CCTTCAACCG TCCGCGCGGC GGCATGTTCC TGTGGGGTCG CCTGCCCGGC
CGCAACGCGG CGGACGTCGC CCGGATCGCC ATCGAGCGCG GCGTGGCCTT CGTGCCGGGG
GCGGCGTTCT ATCCGGTCGA TCCGGACCGC TCGACGCTGC GCCTGTCGTA TGCCACCTCG
TCGCTTGCCC AGGTGGAGGA GGGGGTACGC AAGCTGGCGG GGGCGATCGG CGAGCTGGCG
GCCGCCTGA
|
|---|
| Protein sequence | MDFLQSLLAP RLQNVETSAI RELFKVLGKP GLISFAGGFP DAALFDVEGL KAAADSALAT
DAARALQYGA TEGFEPLREA IVTLMQARGA TVANTDILVT TGSQQGLDLL GKVLIGEGDT
VLTEAPTFLA AIQAFKLYGA KVAGVPTDED GLDLDALERA LAAGRPKFLY VIPNFGNPSG
ALMSLERRRR LLALAVRHDL LIVEDDPYGE LYFDAPPPPS LFALSQQTDG AQGRVVYLGS
LSKVVAPGLR VGWMIAPSLV LSNAVMVKQF ADAHTSTFAQ ATAAAYLRSQ RMETVLPRTR
AAYAERAHAM ADGLRALLPE AELTFNRPRG GMFLWGRLPG RNAADVARIA IERGVAFVPG
AAFYPVDPDR STLRLSYATS SLAQVEEGVR KLAGAIGELA AA
|
|---|
| |