Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc0171 |
Symbol | |
ID | 1218974 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 192394 |
End bp | 193134 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637236528 |
Product | short chain dehydrogenase |
Protein accession | NP_518292 |
Protein GI | 17544890 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.808724 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAACA TCCTGATCGT TGGAGCCACC TCCGCCATCG CGATCGCCTG TGCGCGGCAA TGGGCCGCCG AGGGCGCCCG CTTCTTTCTG GTGGCACGCA ACGGCGAGCG CCTCGAGCAG GTCGCCGACG ACCTGAGCGC GCGCGGCGCG CAACTCGCCA GCCGCCACCA GCTCGACATC ACCGACCTGG AGCGCCATGC GGCCATGTTC GAACAGTGCC TGGCCGCGCT GGGCACGATC GACATCGTCC TGGTCGCCCC GGGAACATTG CCGGACCAGG CGGCCTGCCA GGCGGATCCG GCGATCGCGG TGCGAGAGTT CAACACCAAC GCCACCGCCG TCATCGCCCT GCTGACGCGG ATTGCCAATG CGCTCGAGGC CCAGCGCAGC GGCGCGCTGG CGGTCATTTC GTCGGTGGCG GCGGATCGCG GCCGCCCCTC CAACTATCTG TACGGCAGCG CGAAGGCCGC CCTCTCGGCC TTTTGCGAAG GACTGAACGC GCGCCTGTTC AAAGCCGGCG TGCACGTCCT GACGATCAAG CCGGGCTTCG TCTCGACACC GATGACCGCC GGGCTGCCCT TGCCCGGCCC GCTGGTCGCG TCCCCGGAGA AGGTGTCCCG CGACATCGTG CGCGCCATCG ACAAGCGCAA GGACACGCTG TACACACCGT GGTTCTGGGC GATCATCATG CTGATCATCC GATCGGTGCC GAAGCCTGTT TTCAAACGGA CATCGCTGTA A
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Protein sequence | MKNILIVGAT SAIAIACARQ WAAEGARFFL VARNGERLEQ VADDLSARGA QLASRHQLDI TDLERHAAMF EQCLAALGTI DIVLVAPGTL PDQAACQADP AIAVREFNTN ATAVIALLTR IANALEAQRS GALAVISSVA ADRGRPSNYL YGSAKAALSA FCEGLNARLF KAGVHVLTIK PGFVSTPMTA GLPLPGPLVA SPEKVSRDIV RAIDKRKDTL YTPWFWAIIM LIIRSVPKPV FKRTSL
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