| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0166 |
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| Symbol | |
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| ID | 1218969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 186414 |
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| End bp | 187856 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 637236523 |
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| Product | outer membrane channel lipoprotein |
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| Protein accession | NP_518287 |
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| Protein GI | 17544885 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00297145 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.496674 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGTACAT CGACATCGCT GATCCTGTCC GCCGCGGCCG CCGTCGCACT GGGCGGCTGT
GCCGTCGGCC CGGACTTCAA GGCGCCGGTG CCGCCGGCCG CCTCCGGCTA CACCGCGCAG
CCGCTGCCGG CGGCGACCGC CTCGGCCCCC GCGCCCGGCG GCGAAGCGCA GCACCTTGCC
GAGGCCAACG TGCCGGCGGA CTGGTGGCAC CTGTTCCAGT CGCACGCGCT CGATGCGCTG
GTGGACGAAG CGCTGCGCGC CAGCCCCACA GTGGCGCAGG CCGCCGCGCG CCTGCGCGAG
GCCCAGGCGC AGGCCGATGC GCAGTTCGGC GCGGTGCTGC CGTCGGTGGA CGGCTCGGCC
TCGGCGGTGC GCCAGCAGGT GAACCCGGAA GCGTTCGGCT TCAATACGCC CAAGCCGGGG
CCCTTCACGC TGTATTCGGC GTCACTGTCG GTGTCGTATG CGCTGGACCT GTTCGGCGGC
GTGCGGCGGG CGCTGGAGGC TTCGCGCGCG CAGGTCGATA TGCAGCGTTA CGAGCTGGAG
GCGGCACGGC TGTCGCTGGC CGGCAATGTG GTGACGGCCG CAGTGCGCAT CGCCTCGCTG
GATGCGCAGA TCGCCACCAC ACAGCGCCTG CTGGCCGCGC AGCGCGATCA GCTGGTCATC
ACCGAGCGGC GCTTCGGCGC GGGCGGCGTC GCCCGCGTGG ATGTGCTGTC GCAGCGCACC
CAGGTCGCGC AGACCGAGGC CACCTTGCCG CCGCTCGCCC AGCAGGCAGC CCAGGCACGG
CACCGGCTGT CGGTACTGTT GGGCCGCGAG CCCGGGGCGG GGCTGCCGGA TCTGCCGCCG
CTCGACGCGC TGCGCTTGCC CGATCCGCTG CCGGTGTCGC TGCCGTCCAC GCTGGCCCAG
CGCCGCCCCG ACATCCGCGT CGCCGAGGCC ATGTGGCACG AGGCCAGCGC CAACGTGGGC
GTGGCCACGG CCAACCTGTT CCCGCGCATC ACGCTGTCCG CCGAATTGGG TTCGCAGACC
ACGGGCTTTC GCAACCTGCT GGGCGCGGGG TCGAGCATCT GGAGCCTGGG CGGTTCGCTG
ACGCAGCCGC TGTTCCACGG TGGCACGCTG CGCGCCCGCA AGCGCGAGGC CGAGGCGGCC
TACGACGCGG CCGGCGCGGC CTACCGGCAG GCGGTGCTGC AAGGGTTGCA GGAGGTGGCC
GACGCGCTGC ACGCGGTGCA CAACGACGCG CGCACGCTGC AGGCCCGCGC CCTGGCCACC
GATCAGGCCA CGCAGGCCCT GCGCACCGAG CAAGCCCGCT ACGCCGCCGG CGGCATCAGC
ACGCTCGCGC TGCTCGACGC CCAGCGCCAG GTTGACCAGG CGATGCTGCA GCAGGTGCAG
AGCCGCGCGG ACCGGCTGCT GGATTCGGCT GCGCTGATGC AGGCGCTGGG GGGCGGCTGG
TAG
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| Protein sequence | MCTSTSLILS AAAAVALGGC AVGPDFKAPV PPAASGYTAQ PLPAATASAP APGGEAQHLA
EANVPADWWH LFQSHALDAL VDEALRASPT VAQAAARLRE AQAQADAQFG AVLPSVDGSA
SAVRQQVNPE AFGFNTPKPG PFTLYSASLS VSYALDLFGG VRRALEASRA QVDMQRYELE
AARLSLAGNV VTAAVRIASL DAQIATTQRL LAAQRDQLVI TERRFGAGGV ARVDVLSQRT
QVAQTEATLP PLAQQAAQAR HRLSVLLGRE PGAGLPDLPP LDALRLPDPL PVSLPSTLAQ
RRPDIRVAEA MWHEASANVG VATANLFPRI TLSAELGSQT TGFRNLLGAG SSIWSLGGSL
TQPLFHGGTL RARKREAEAA YDAAGAAYRQ AVLQGLQEVA DALHAVHNDA RTLQARALAT
DQATQALRTE QARYAAGGIS TLALLDAQRQ VDQAMLQQVQ SRADRLLDSA ALMQALGGGW
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